Non-Coding RNA Search

Ss1.1-Liv1-LVRM10137C06.5

Sequence:


               
               AATGAGATTCTAAAATGAAAAGGGAAAATGGAGAAAAGGCCTCTTGGATAAAGTAACCCC
TCCCCAAGGAGGTGAGTGCTGCTTGTTGATGTTGTCTTCATGCTCATAATCCTTGTAATC
CCCCCCACCCCCAATTTGGTAAGAAGCCTCTCAAAACTGTCAAGAGATGAGGACGTGGAG
GCTTCCACATTGTTAGCTGCAGAGACCCCAGCACACAGAAAAGTAGGGGACCCATGCTGG
GGCCTGTGTGTTGAATGAAGCACGGAATGAGGCTGGGACAGGAGCTGCATGCTCTCCTCG
AAGGGCTTGGCTAGACGTGCTGACGTCATGTTAGATGCTGGCACGCTTCCCTTTTCAGCA
GAAGTGAGCCCCAAGCTACTGAGACCTCGGCCAGGCAAATGGTGGCCAAGGGGACAGATG
CCAAGCCAGATTCCATGGGTTTGAATCCTGGCTCTGCCACTTTCCAGCTGTGTGCCTTTG
GGTGTTACAGGAGCACCTACCAGCATGTCAGAGTCTTGAAACGTGGCCCGAGGAAGGAGC
CCCAGGGATGTGAAGCGAATGGCCAGCCTGTGAGCTGTCTCTGGGTCTAGCAGCCCCTGC
AGAGCCGGCATCAGGAGTTCCCTGTAGAAACGCTCATCCCCCGTGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGAGATTCTAAAATGAAAAGGGAAAATGGAGAAAAGGCCTCTTGGATAAAGTAACCCC
TCCCCAAGGAGGTGAGTGCTGCTTGTTGATGTTGTCTTCATGCTCATAATCCTTGTAATC
CCCCCCACCCCCAATTTGGTAAGAAGCCTCTCAAAACTGTCAAGAGATGAGGACGTGGAG
GCTTCCACATTGTTAGCTGCAGAGACCCCAGCACACAGAAAAGTAGGGGACCCATGCTGG
GGCCTGTGTGTTGAATGAAGCACGGAATGAGGCTGGGACAGGAGCTGCATGCTCTCCTCG
AAGGGCTTGGCTAGACGTGCTGACGTCATGTTAGATGCTGGCACGCTTCCCTTTTCAGCA
GAAGTGAGCCCCAAGCTACTGAGACCTCGGCCAGGCAAATGGTGGCCAAGGGGACAGATG
CCAAGCCAGATTCCATGGGTTTGAATCCTGGCTCTGCCACTTTCCAGCTGTGTGCCTTTG
GGTGTTACAGGAGCACCTACCAGCATGTCAGAGTCTTGAAACGTGGCCCGAGGAAGGAGC
CCCAGGGATGTGAAGCGAATGGCCAGCCTGTGAGCTGTCTCTGGGTCTAGCAGCCCCTGC
AGAGCCGGCATCAGGAGTTCCCTGTAGAAACGCTCATCCCCCGTGGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               363-483, - strand, RNAz p=0.923923

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               363-483, - strand, RNAz p=0.923923

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-483, gnl|bosTau2|chr18 (32187669-32188177)
               

               
               1-483, gnl|Hg17|chr16 (70604566-70603965)
               


               
               489-647, gnl|bosTau2|chr18 (32188329-32188487)
               

               
               489-647, gnl|Hg17|chr16 (70603673-70603516)
               

               
               489-647, gnl|Mm7|chr8 (108206328-108206486)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-483, gnl|bosTau2|chr18 (32187669-32188177)
               

               
               1-483, gnl|Hg17|chr16 (70604566-70603965)
               


               
               489-647, gnl|bosTau2|chr18 (32188329-32188487)
               

               
               489-647, gnl|Hg17|chr16 (70603673-70603516)
               

               
               489-647, gnl|Mm7|chr8 (108206328-108206486)

	1-483, gnl\|bosTau2\|chr18 (32187669-32188177)
	1-483, gnl\|Hg17\|chr16 (70604566-70603965)

	489-647, gnl\|bosTau2\|chr18 (32188329-32188487)
	489-647, gnl\|Hg17\|chr16 (70603673-70603516)
	489-647, gnl\|Mm7\|chr8 (108206328-108206486)