Non-Coding RNA Search

Ss1.1-Liv1-LVRM10140D05.5

Sequence:


               
               AGTCAACAGACGGCGTGCCCCGCGGGCCTCGCCATGGCCTCCCTGCGGCCGGCCCTTCTC
TGCCTCCTCCTCTGCCTGCAGGGGTCCCTGGCGGCAGTTTTTGTTGCCCAGGAACAAGCC
CACAGCCTCCTGCACAGGTTCCGGCGCGCCAACTCATTCCTGGAGGAGCTGTGGCCCGGC
TCGCTGGAGAGGGAGTGCAGGGAGGAGCAGTGCTCCTTCGAGGAGGCCCGGGAGATCTTC
AAGAGTGAGGAGAGGACGAGGCAGTTCTGGGTTTCCTACAACGACGGAGACCAGTGCGCC
TCGAACCCCTGCCTGAATGGGGGCTCCTGCGAGGACCAGCTCCAGGCCTACATCTGCTTC
TGCCCGGAAGGCTTCGAGGGTCGGAACTGCGAAACCAACAAGAAGAGCCAGCTGATCTGC
ATGAATGACAACGGGGGCTGCGAGCAGTACTGCAGCGACCACGCGGAGGCCGGGCGCTCC
TGCTGGTGCCATGAGGGGTACGCCCTCCAGGAGGACGGGGTGTCCTGTGAGCCCACAGTT
GAATATCCGTGTGGAAAAATACCTGTTCTGGAAAAAAGAAATGACAGCAACCCTCAGGGC
CGAATCGTAGGTGGCAAGGTCTGCCCCCAAGGCGAGTGTCCCTGGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCAACAGACGGCGTGCCCCGCGGGCCTCGCCATGGCCTCCCTGCGGCCGGCCCTTCTC
TGCCTCCTCCTCTGCCTGCAGGGGTCCCTGGCGGCAGTTTTTGTTGCCCAGGAACAAGCC
CACAGCCTCCTGCACAGGTTCCGGCGCGCCAACTCATTCCTGGAGGAGCTGTGGCCCGGC
TCGCTGGAGAGGGAGTGCAGGGAGGAGCAGTGCTCCTTCGAGGAGGCCCGGGAGATCTTC
AAGAGTGAGGAGAGGACGAGGCAGTTCTGGGTTTCCTACAACGACGGAGACCAGTGCGCC
TCGAACCCCTGCCTGAATGGGGGCTCCTGCGAGGACCAGCTCCAGGCCTACATCTGCTTC
TGCCCGGAAGGCTTCGAGGGTCGGAACTGCGAAACCAACAAGAAGAGCCAGCTGATCTGC
ATGAATGACAACGGGGGCTGCGAGCAGTACTGCAGCGACCACGCGGAGGCCGGGCGCTCC
TGCTGGTGCCATGAGGGGTACGCCCTCCAGGAGGACGGGGTGTCCTGTGAGCCCACAGTT
GAATATCCGTGTGGAAAAATACCTGTTCTGGAAAAAAGAAATGACAGCAACCCTCAGGGC
CGAATCGTAGGTGGCAAGGTCTGCCCCCAAGGCGAGTGTCCCTGGCAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55669520|pdb|1O5D|L

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55669520|pdb|1O5D|L

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               134-253, + strand, RNAz p=0.671024

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               134-253, + strand, RNAz p=0.671024

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               95-258, gnl|bosTau2|chr12 (46850704-46850541)
               

               
               95-258, gnl|Hg17|chr13 (112813002-112813165)
               

               
               95-258, gnl|Mm7|chr8 (13002861-13003024)
               


               
               283-396, gnl|bosTau2|chr12 (46848623-46848510)
               

               
               283-396, gnl|Hg17|chr13 (112816161-112816274)
               

               
               283-396, gnl|Mm7|chr8 (13004877-13004990)
               


               
               398-542, gnl|bosTau2|chr12 (46848009-46847865)
               

               
               398-542, gnl|Hg17|chr13 (112817975-112818119)
               

               
               398-542, gnl|Mm7|chr8 (13006405-13006549)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-258, gnl|bosTau2|chr12 (46850704-46850541)
               

               
               95-258, gnl|Hg17|chr13 (112813002-112813165)
               

               
               95-258, gnl|Mm7|chr8 (13002861-13003024)
               


               
               283-396, gnl|bosTau2|chr12 (46848623-46848510)
               

               
               283-396, gnl|Hg17|chr13 (112816161-112816274)
               

               
               283-396, gnl|Mm7|chr8 (13004877-13004990)
               


               
               398-542, gnl|bosTau2|chr12 (46848009-46847865)
               

               
               398-542, gnl|Hg17|chr13 (112817975-112818119)
               

               
               398-542, gnl|Mm7|chr8 (13006405-13006549)

	95-258, gnl\|bosTau2\|chr12 (46850704-46850541)
	95-258, gnl\|Hg17\|chr13 (112813002-112813165)
	95-258, gnl\|Mm7\|chr8 (13002861-13003024)

	283-396, gnl\|bosTau2\|chr12 (46848623-46848510)
	283-396, gnl\|Hg17\|chr13 (112816161-112816274)
	283-396, gnl\|Mm7\|chr8 (13004877-13004990)

	398-542, gnl\|bosTau2\|chr12 (46848009-46847865)
	398-542, gnl\|Hg17\|chr13 (112817975-112818119)
	398-542, gnl\|Mm7\|chr8 (13006405-13006549)