Ss1.1-Liv1-LVRM10142A06.5
|
AGTCTCTGGAGGCGGCGGCGTCCGGCGCGCGGGCGGCCTGCTGGGCGGGCTGAGGGGCCA
GCTGCGTGCGGGTGAGGCGGGGAGAGACAGAGCAGTAGAGCAACCCCGGCGACAGAGCAT
CTGCAGTACTAGAACGAGGAACTTCAGGATTCACCGATTGTTGGTGTAAACGTTTGTTCA
GATCCACTGAGCTGAATACTTAAGATCTGTGCATTTTATGGTTTTCTACTTGGAAGAGAC
CATGACTACTGATGAAGGTGCCAAGAACAATGGAGAAAGCCCAGCAGCAGCTGTTGCTGA
ACAGGGAGAGGATATTACCTCCAAAAAAGATAGAGGAGTTTTAAAGATTGTCAAACGAGT
GGGGAATAGTGAGGAAACACCAATGATTGGAGACAAAGTTTATGTCCATTATAAAGGAAA
ATTGTCAAATGGAAAGAAGTTTGATTCCAGTCATGACAGGAATGAACCGTTTGTCTTTAG
TCTTGGCAAAGGCCAGGTTATCAAGGCATGGGATATCGGGGTGGCTACCATGAAGAAAGG
AGAGATCTGCCATTTACTGTGCAAACCAGAATATGCATACGGCTCGGCTGGCAGTCTCCC
CAAAATTCCCTCGAATGCAACTCTCTTTTTTGAGATTGAGCTCCTTGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGTCTCTGGAGGCGGCGGCGTCCGGCGCGCGGGCGGCCTGCTGGGCGGGCTGAGGGGCCA
GCTGCGTGCGGGTGAGGCGGGGAGAGACAGAGCAGTAGAGCAACCCCGGCGACAGAGCAT
CTGCAGTACTAGAACGAGGAACTTCAGGATTCACCGATTGTTGGTGTAAACGTTTGTTCA
GATCCACTGAGCTGAATACTTAAGATCTGTGCATTTTATGGTTTTCTACTTGGAAGAGAC
CATGACTACTGATGAAGGTGCCAAGAACAATGGAGAAAGCCCAGCAGCAGCTGTTGCTGA
ACAGGGAGAGGATATTACCTCCAAAAAAGATAGAGGAGTTTTAAAGATTGTCAAACGAGT
GGGGAATAGTGAGGAAACACCAATGATTGGAGACAAAGTTTATGTCCATTATAAAGGAAA
ATTGTCAAATGGAAAGAAGTTTGATTCCAGTCATGACAGGAATGAACCGTTTGTCTTTAG
TCTTGGCAAAGGCCAGGTTATCAAGGCATGGGATATCGGGGTGGCTACCATGAAGAAAGG
AGAGATCTGCCATTTACTGTGCAAACCAGAATATGCATACGGCTCGGCTGGCAGTCTCCC
CAAAATTCCCTCGAATGCAACTCTCTTTTTTGAGATTGAGCTCCTTGA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
383-454, + strand, RNAmicro p=0.999488 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
383-454, + strand, RNAmicro p=0.999488 |
|
345-492, BP438212 full-length enriched swine cDNA library, adult lung Sus
(dbj|BP438212.1|), blast E-value=0, identity=100% |
|
345-492, BP448504 full-length enriched swine cDNA library, adult liver Sus
(dbj|BP448504.1|), blast E-value=0, identity=100% |
|
345-492, DB789046 full-length enriched swine cDNA library, adult adrenal
(dbj|DB789046.1|), blast E-value=0, identity=100% |
|
345-492, DKFZp469A0541_r1 469 (synonym (emb|CR774824.1|), blast E-value=0,
identity=94.59% |
|
345-492, DKFZp469G1973_r1 469 (synonym (emb|CR787183.1|), blast E-value=0,
identity=94.59% |
|
345-492, DKFZp469M079_r1 469 (synonym (emb|CR790988.1|), blast E-value=0,
identity=94.59% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
345-492, BP438212 full-length enriched swine cDNA library, adult lung Sus
(dbj|BP438212.1|), blast E-value=0, identity=100% |
|
345-492, BP448504 full-length enriched swine cDNA library, adult liver Sus
(dbj|BP448504.1|), blast E-value=0, identity=100% |
|
345-492, DB789046 full-length enriched swine cDNA library, adult adrenal
(dbj|DB789046.1|), blast E-value=0, identity=100% |
|
345-492, DKFZp469A0541_r1 469 (synonym (emb|CR774824.1|), blast E-value=0,
identity=94.59% |
|
345-492, DKFZp469G1973_r1 469 (synonym (emb|CR787183.1|), blast E-value=0,
identity=94.59% |
|
345-492, DKFZp469M079_r1 469 (synonym (emb|CR790988.1|), blast E-value=0,
identity=94.59% |
|
345-492, gnl|bosTau2|chr23 (7291070-7291217) |
|
345-492, gnl|canFam2|chr12 (7783617-7783802) |
|
345-492, gnl|danRer3|chr6 (22957764-22957589) |
|
345-492, gnl|dasNov1|scaffold_18365 (75340-75531) |
|
345-492, gnl|echTel1|scaffold_282521 (17547-17735) |
|
345-492, gnl|fr1|chrUn (216503596-216503789) |
|
345-492, gnl|galGal2|chr32 (972971-972791) |
|
345-492, gnl|hg17|chr6 (35712766-35712956) |
|
345-492, gnl|Hg17|chr6 (35712915-35712768) |
|
345-492, gnl|loxAfr1|scaffold_47968 (9072-9262) |
|
345-492, gnl|mm7|chr17 (26624449-26624636) |
|
345-492, gnl|Mm7|chr17 (26624598-26624451) |
|
345-492, gnl|monDom2|scaffold_42 (11347454-11347266) |
|
345-492, gnl|oryCun1|scaffold_186648 (393-582) |
|
345-492, gnl|panTro1|chr5 (36169307-36169497) |
|
345-492, gnl|rheMac2|chr4 (35368530-35368720) |
|
345-492, gnl|rn3|chr20 (6676905-6677091) |
|
345-492, gnl|tetNig1|chr11 (5152786-5152946) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
345-492, gnl|bosTau2|chr23 (7291070-7291217) |
|
345-492, gnl|canFam2|chr12 (7783617-7783802) |
|
345-492, gnl|danRer3|chr6 (22957764-22957589) |
|
345-492, gnl|dasNov1|scaffold_18365 (75340-75531) |
|
345-492, gnl|echTel1|scaffold_282521 (17547-17735) |
|
345-492, gnl|fr1|chrUn (216503596-216503789) |
|
345-492, gnl|galGal2|chr32 (972971-972791) |
|
345-492, gnl|hg17|chr6 (35712766-35712956) |
|
345-492, gnl|Hg17|chr6 (35712915-35712768) |
|
345-492, gnl|loxAfr1|scaffold_47968 (9072-9262) |
|
345-492, gnl|mm7|chr17 (26624449-26624636) |
|
345-492, gnl|Mm7|chr17 (26624598-26624451) |
|
345-492, gnl|monDom2|scaffold_42 (11347454-11347266) |
|
345-492, gnl|oryCun1|scaffold_186648 (393-582) |
|
345-492, gnl|panTro1|chr5 (36169307-36169497) |
|
345-492, gnl|rheMac2|chr4 (35368530-35368720) |
|
345-492, gnl|rn3|chr20 (6676905-6677091) |
|
345-492, gnl|tetNig1|chr11 (5152786-5152946) |
