Non-Coding RNA Search

Ss1.1-Liv1-LVRM10142E10.5

Sequence:


               
               AGTCTCTCCACTCCCGCCTCCAGAGTCCAAGGGTCCAAGTGGTAGGCTGTTTGAGGTCTG
CTGGGCACTACAAAGGGAGTCTGCACTGGAGAAGGTTGGTGGGTGGGCGACATGGCATTC
GAGGAGCTGCTAGACAAGGTGGGCGGCTTTGGGCCCTTCCAGCTGTGGAACGTGGCACTG
TTGGCCCTGCCCCGTGTGCTGCTGCCCATGCACTTTCTCTTGCCCATCTTCCTGACTGCC
GTGCCGGCCCACCGCTGTGCCCTGCCTGGAGCCCCTGCCAACTTCAGTCACCAGGACGCA
TGGCTGGAGGCCCACCTGCCCCGGGAGCCTGATGGCAGGTTCAGCTCCTGCCTCCGCTTC
ACCCATTCCCGGGCCCTCCCCAACACCACGTTGTGGGGACTCGGGCAGAGCCCTGGGGAG
CAGCTGGAGGGTGAGCCCTCCACAGTGCCCTGCCCTCAGGGCTGGGAATACGACCACTCG
GAGTTCTCCTCCACCATTGCAACTGAGTGGGACCTGGTGTGTGAGCAGAAAGGCCTGAAC
AGAGCCACTTCCACCTTCTTCTTCGCCGGTGTGCTGGTGGGGGCCGTGGCCTTCGGATAC
CTGTCTGACAGGTTTGGGCGGCGCCGTCTGCTGCTGGTGGCCTATGTGAGTGCCCTGGTG
CTCGGCCTGGTGTCTGCAGCTTCAGTCAGCTACACCATGTTCGCCATCACCCGCACCCTC
ACTGGCACAGCCCTGGCTGGCTTCACCATCATCGTGATGCCACTGGAGCTGGAGTGGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCTCTCCACTCCCGCCTCCAGAGTCCAAGGGTCCAAGTGGTAGGCTGTTTGAGGTCTG
CTGGGCACTACAAAGGGAGTCTGCACTGGAGAAGGTTGGTGGGTGGGCGACATGGCATTC
GAGGAGCTGCTAGACAAGGTGGGCGGCTTTGGGCCCTTCCAGCTGTGGAACGTGGCACTG
TTGGCCCTGCCCCGTGTGCTGCTGCCCATGCACTTTCTCTTGCCCATCTTCCTGACTGCC
GTGCCGGCCCACCGCTGTGCCCTGCCTGGAGCCCCTGCCAACTTCAGTCACCAGGACGCA
TGGCTGGAGGCCCACCTGCCCCGGGAGCCTGATGGCAGGTTCAGCTCCTGCCTCCGCTTC
ACCCATTCCCGGGCCCTCCCCAACACCACGTTGTGGGGACTCGGGCAGAGCCCTGGGGAG
CAGCTGGAGGGTGAGCCCTCCACAGTGCCCTGCCCTCAGGGCTGGGAATACGACCACTCG
GAGTTCTCCTCCACCATTGCAACTGAGTGGGACCTGGTGTGTGAGCAGAAAGGCCTGAAC
AGAGCCACTTCCACCTTCTTCTTCGCCGGTGTGCTGGTGGGGGCCGTGGCCTTCGGATAC
CTGTCTGACAGGTTTGGGCGGCGCCGTCTGCTGCTGGTGGCCTATGTGAGTGCCCTGGTG
CTCGGCCTGGTGTCTGCAGCTTCAGTCAGCTACACCATGTTCGCCATCACCCGCACCCTC
ACTGGCACAGCCCTGGCTGGCTTCACCATCATCGTGATGCCACTGGAGCTGGAGTGGCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17389910|gb|AAH17963.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17389910|gb|AAH17963.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               280-479, - strand, RNAz p=0.998506

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-479, - strand, RNAz p=0.998506

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-507, gnl|bosTau2|chr23 (17160735-17161240)
               

               
               1-507, gnl|Hg17|chr6 (43373967-43374467)
               

               
               1-507, gnl|Mm7|chr17 (44567219-44566730)
               


               
               609-766, gnl|bosTau2|chr23 (17162103-17162260)
               

               
               609-766, gnl|Hg17|chr6 (43375340-43375497)
               

               
               609-766, gnl|Mm7|chr19 (8299456-8299631)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-507, gnl|bosTau2|chr23 (17160735-17161240)
               

               
               1-507, gnl|Hg17|chr6 (43373967-43374467)
               

               
               1-507, gnl|Mm7|chr17 (44567219-44566730)
               


               
               609-766, gnl|bosTau2|chr23 (17162103-17162260)
               

               
               609-766, gnl|Hg17|chr6 (43375340-43375497)
               

               
               609-766, gnl|Mm7|chr19 (8299456-8299631)

	1-507, gnl\|bosTau2\|chr23 (17160735-17161240)
	1-507, gnl\|Hg17\|chr6 (43373967-43374467)
	1-507, gnl\|Mm7\|chr17 (44567219-44566730)

	609-766, gnl\|bosTau2\|chr23 (17162103-17162260)
	609-766, gnl\|Hg17\|chr6 (43375340-43375497)
	609-766, gnl\|Mm7\|chr19 (8299456-8299631)