Non-Coding RNA Search

Ss1.1-Liv1-LVRM10143A09.5

Sequence:


               
               TGCCTCGCAGTCCTGGGCCAGCCAGGNACCCTGCCTGCTCCAGGCCTCAATGTTCCCTTC
TTTAAGGGCAGGGGGTTGGACTCGATGACTTCCTGGGGCAGGCTGAGTCCTGTGACTCGG
GGGTGGCGGGGTTGCCTGGGGACAAAGATGCAGTGTGTGCCGCCCCCAAGCCCAGGGCGG
GACAGGCCCGGCCAGATGTGCGCCTCCTCCGCCTTGAGTCGCCAGCTGCTTGGGCTGGGC
CCCCGTCCTCCCACCTCTCTCCTGGGGGTTGCTGGGCCACGGCAGGCAGACGCTGGAGAG
CCAGGGCTGATGAGAAAACGACCCCTCCGCTCCATCTGGAACAGTTCTTTGCAGAGCTCT
GGGCCAGGGGAGCCTGGCTGCTCACATGCCTTAGTCTTGCTGCCTGAGCAGAACAGGCTC
TGTCCTGGGAAGGGGCACCTCCGACCCTTGGACGTGGCCAAAGAACAGACTCGGCTCCCT
AGAGGCTCGCACCTCCTCTCGGGCCCACCTTACACCAGCAAGGGGTCCCCCCAGCCTACA
GTCCGTGCTGCTCCGTCAGCTCTGTCTGGGGCCTCCCTCCGCAGCCATCTGGGAGCCAGG
CTGGAGCACGGCAGAGAGGCCTGAGCGGAGACAAGAGCGGGTCCTGGGGTTTGAGAGAGG
AGGAGGCGTGTGCTGACATGTGCACAAGCGTGTCCCCACCCCCTCTCACAGGGAAGGCGT
GTCCCCTGGCCCAGCGTGGCCTGCCCTCCAGCAGGAGGGTACACGCTCCTTGAAATAAGG
GTTCTGTGCGCTCTCTGGCAGAGCCTGTTCCGCAGAGCCGGTCTCCTTTACCTGCAGGAC
TTGCCAGGGCCTTGAGATAATGGATGTGTATTCCCAGTCCCTGGTGGGCATCTCGAGGTC
GCTNCCCAGACCTTTGGGTCCACACCTCCAAGCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCTCGCAGTCCTGGGCCAGCCAGGNACCCTGCCTGCTCCAGGCCTCAATGTTCCCTTC
TTTAAGGGCAGGGGGTTGGACTCGATGACTTCCTGGGGCAGGCTGAGTCCTGTGACTCGG
GGGTGGCGGGGTTGCCTGGGGACAAAGATGCAGTGTGTGCCGCCCCCAAGCCCAGGGCGG
GACAGGCCCGGCCAGATGTGCGCCTCCTCCGCCTTGAGTCGCCAGCTGCTTGGGCTGGGC
CCCCGTCCTCCCACCTCTCTCCTGGGGGTTGCTGGGCCACGGCAGGCAGACGCTGGAGAG
CCAGGGCTGATGAGAAAACGACCCCTCCGCTCCATCTGGAACAGTTCTTTGCAGAGCTCT
GGGCCAGGGGAGCCTGGCTGCTCACATGCCTTAGTCTTGCTGCCTGAGCAGAACAGGCTC
TGTCCTGGGAAGGGGCACCTCCGACCCTTGGACGTGGCCAAAGAACAGACTCGGCTCCCT
AGAGGCTCGCACCTCCTCTCGGGCCCACCTTACACCAGCAAGGGGTCCCCCCAGCCTACA
GTCCGTGCTGCTCCGTCAGCTCTGTCTGGGGCCTCCCTCCGCAGCCATCTGGGAGCCAGG
CTGGAGCACGGCAGAGAGGCCTGAGCGGAGACAAGAGCGGGTCCTGGGGTTTGAGAGAGG
AGGAGGCGTGTGCTGACATGTGCACAAGCGTGTCCCCACCCCCTCTCACAGGGAAGGCGT
GTCCCCTGGCCCAGCGTGGCCTGCCCTCCAGCAGGAGGGTACACGCTCCTTGAAATAAGG
GTTCTGTGCGCTCTCTGGCAGAGCCTGTTCCGCAGAGCCGGTCTCCTTTACCTGCAGGAC
TTGCCAGGGCCTTGAGATAATGGATGTGTATTCCCAGTCCCTGGTGGGCATCTCGAGGTC
GCTNCCCAGACCTTTGGGTCCACACCTCCAAGCCCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               22-122, - strand, RNAz p=0.575463
               

               
               593-813, + strand, RNAz p=0.964165

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               22-122, - strand, RNAz p=0.575463
               

               
               593-813, + strand, RNAz p=0.964165

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               21-503, gnl|bosTau2|chr7 (29964980-29964506)
               

               
               21-503, gnl|Hg17|chr5 (139038393-139038852)
               

               
               21-503, gnl|Mm7|chr18 (36233186-36233731)
               


               
               523-872, gnl|bosTau2|chr7 (29964392-29964043)
               

               
               523-872, gnl|Hg17|chr5 (139038942-139039319)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-503, gnl|bosTau2|chr7 (29964980-29964506)
               

               
               21-503, gnl|Hg17|chr5 (139038393-139038852)
               

               
               21-503, gnl|Mm7|chr18 (36233186-36233731)
               


               
               523-872, gnl|bosTau2|chr7 (29964392-29964043)
               

               
               523-872, gnl|Hg17|chr5 (139038942-139039319)

	22-122, - strand, RNAz p=0.575463
	593-813, + strand, RNAz p=0.964165

	21-503, gnl\|bosTau2\|chr7 (29964980-29964506)
	21-503, gnl\|Hg17\|chr5 (139038393-139038852)
	21-503, gnl\|Mm7\|chr18 (36233186-36233731)

	523-872, gnl\|bosTau2\|chr7 (29964392-29964043)
	523-872, gnl\|Hg17\|chr5 (139038942-139039319)