Non-Coding RNA Search

Ss1.1-Liv1-LVRM10144E09.5

Sequence:


               
               CCGCCTGGGAGGTTGAGAGCAGCGGGTGCCGGGGACCCGGCGCCAGCTTGGGAGCCTAGG
AGTTCCAGGGGGAGGGAAGTTGTCAAACGGAGGCCGAGGGAAATGAGGCGGAGGCCGCGA
GAAGCGAGGAGCCCCGCCCCTCCGCCATAGCGGCCTCCCAGTGCCGCCTCTTCCTTTACA
GCCTGCAGCCCGCCCCTGCCTTCCGGCCCTAGGCCGGACCGGGCCCCACCGGTTCCCTCG
GGAGTTAACCGCTGAGCCGTGTCCCCTTTGTGGAGAGGAGATGCCCAGTCCCTGGTTGGG
ACTACGTCCGAAAAGGAGAACGCGAGAACGGGCTTCGGACCCGGCTGGGCTTGGGAAAGA
TGGCCTCTGCCTCGCGGCAGCTAGCAAAACCTCTGGTCCTGAGGACCTTGGGTCAGAGCG
ACCTCCCTACCCCACAGAGGATGTTAACCTTATCCAGAGAAACTAGGGCTCCAATTCCAC
AGGTTTTCCTATCGGCCCAGATTGGGCCCTCCCTGCCTTGAGTACAAACAGCAAGAGCTT
GCGCTGTCAGACAAGTACTGGGCTTGGAGACCCGGCTTGTAATCCAGTTTCTGGAAGACT
GCAACCCTTTTGGCAGGAGTGAGGGCTGGTAGACTATGAGGTTTCAGAAGGGAAAAAAAG
GAAAAGAAAAGACATTCTCTTTAAATATTGCTTTGGCTGTGCCACCTGACCCCAGCGAGC
CTCAGTTTCCACATCCATAAAAATGGCGATTGTAATTACGCAGGCCTCATGGGGTGTAAT
GAGATCTCTGGTGGAAAACTCTGGAGATTTTATTACCCTGNGCATATTTATCTCACAGGA
AAACAGGGTAAAACTGGTTGCTCTCTAAGTGCCCTGCCAGTTCAGAATCTGTGATTTCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCTGGGAGGTTGAGAGCAGCGGGTGCCGGGGACCCGGCGCCAGCTTGGGAGCCTAGG
AGTTCCAGGGGGAGGGAAGTTGTCAAACGGAGGCCGAGGGAAATGAGGCGGAGGCCGCGA
GAAGCGAGGAGCCCCGCCCCTCCGCCATAGCGGCCTCCCAGTGCCGCCTCTTCCTTTACA
GCCTGCAGCCCGCCCCTGCCTTCCGGCCCTAGGCCGGACCGGGCCCCACCGGTTCCCTCG
GGAGTTAACCGCTGAGCCGTGTCCCCTTTGTGGAGAGGAGATGCCCAGTCCCTGGTTGGG
ACTACGTCCGAAAAGGAGAACGCGAGAACGGGCTTCGGACCCGGCTGGGCTTGGGAAAGA
TGGCCTCTGCCTCGCGGCAGCTAGCAAAACCTCTGGTCCTGAGGACCTTGGGTCAGAGCG
ACCTCCCTACCCCACAGAGGATGTTAACCTTATCCAGAGAAACTAGGGCTCCAATTCCAC
AGGTTTTCCTATCGGCCCAGATTGGGCCCTCCCTGCCTTGAGTACAAACAGCAAGAGCTT
GCGCTGTCAGACAAGTACTGGGCTTGGAGACCCGGCTTGTAATCCAGTTTCTGGAAGACT
GCAACCCTTTTGGCAGGAGTGAGGGCTGGTAGACTATGAGGTTTCAGAAGGGAAAAAAAG
GAAAAGAAAAGACATTCTCTTTAAATATTGCTTTGGCTGTGCCACCTGACCCCAGCGAGC
CTCAGTTTCCACATCCATAAAAATGGCGATTGTAATTACGCAGGCCTCATGGGGTGTAAT
GAGATCTCTGGTGGAAAACTCTGGAGATTTTATTACCCTGNGCATATTTATCTCACAGGA
AAACAGGGTAAAACTGGTTGCTCTCTAAGTGCCCTGCCAGTTCAGAATCTGTGATTTCGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               75-192, - strand, RNAz p=0.940904

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-192, - strand, RNAz p=0.940904

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-891, gnl|bosTau2|chr2 (78625840-78626720)
               

               
               1-891, gnl|Hg17|chr1 (26798632-26799479)
               

               
               1-891, gnl|Mm7|chr4 (133051021-133050211)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-891, gnl|bosTau2|chr2 (78625840-78626720)
               

               
               1-891, gnl|Hg17|chr1 (26798632-26799479)
               

               
               1-891, gnl|Mm7|chr4 (133051021-133050211)

	1-891, gnl\|bosTau2\|chr2 (78625840-78626720)
	1-891, gnl\|Hg17\|chr1 (26798632-26799479)
	1-891, gnl\|Mm7\|chr4 (133051021-133050211)