Non-Coding RNA Search

Ss1.1-Liv1-LVRM10144G11.5

Sequence:


               
               CGTGCCTACTGGGAGTGAGCGCGGAGCAAGCGGCGGCGGCGGGGCTCCGCCGCAGCAACG
CGGGCCCGGGCGAGCTCGAGCGGGTGCAGGACGCGCTGCCGCCGCCCCCAAAGCAGCCCG
CGGGGCCCAGGACCGCCGGGCCTGGCCGCCGGCCGGCCGTGCGCCGAGTTCAGCTGCCAC
CAGCACGGCCAGCATGGTGGACCACTTGCTTCCAGTGGACGAGAGCTTCTCGTCGCCGAA
ATGCCCGGTTGGTTATCTGGGTGACAGGCTGGCCAGCGGGCGGTCATACCACATGCTGCC
CTCGCCCCTCTCAGAGGACGACAGCGACGCCTCCAGCCTCTGCTCCTGTGCCAGCCCTGA
CTCGCAAGCCCTTTGCTCCTGCTACAGCGGTGGCTCAGGTGCTGAGGGGCAGGACAGCAT
CTTGGACTTCCTGCTGTCCCAGGCCACGCTGGGCGGTGGTGGTGGCTGTGGCAGCATCGG
GGCTAACGGTGGCCCCGTGGCCTGGGGGACCTGGCGAAAAACACCAGCTCCTGTGAAGGG
GGAGCATTTCTGCTTCCCCGAGTTTCCTGCGGGCGACCCTGATGATGTCCCAAGGCCCTT
CCAGCCCACCCTGGAGGAAATCGAAGAGTTTTTGGAGGAAAACATGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGCCTACTGGGAGTGAGCGCGGAGCAAGCGGCGGCGGCGGGGCTCCGCCGCAGCAACG
CGGGCCCGGGCGAGCTCGAGCGGGTGCAGGACGCGCTGCCGCCGCCCCCAAAGCAGCCCG
CGGGGCCCAGGACCGCCGGGCCTGGCCGCCGGCCGGCCGTGCGCCGAGTTCAGCTGCCAC
CAGCACGGCCAGCATGGTGGACCACTTGCTTCCAGTGGACGAGAGCTTCTCGTCGCCGAA
ATGCCCGGTTGGTTATCTGGGTGACAGGCTGGCCAGCGGGCGGTCATACCACATGCTGCC
CTCGCCCCTCTCAGAGGACGACAGCGACGCCTCCAGCCTCTGCTCCTGTGCCAGCCCTGA
CTCGCAAGCCCTTTGCTCCTGCTACAGCGGTGGCTCAGGTGCTGAGGGGCAGGACAGCAT
CTTGGACTTCCTGCTGTCCCAGGCCACGCTGGGCGGTGGTGGTGGCTGTGGCAGCATCGG
GGCTAACGGTGGCCCCGTGGCCTGGGGGACCTGGCGAAAAACACCAGCTCCTGTGAAGGG
GGAGCATTTCTGCTTCCCCGAGTTTCCTGCGGGCGACCCTGATGATGTCCCAAGGCCCTT
CCAGCCCACCCTGGAGGAAATCGAAGAGTTTTTGGAGGAAAACATGGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               178-284, - strand, RNAz p=0.986482
               

               
               365-601, + strand, RNAz p=0.99986

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               178-284, - strand, RNAz p=0.986482
               

               
               365-601, + strand, RNAz p=0.99986

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               380-478, + strand, RNAmicro p=0.999151

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               380-478, + strand, RNAmicro p=0.999151

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               178-648, gnl|bosTau2|chr7 (16733643-16733200)
               

               
               178-648, gnl|Hg17|chr3 (127554491-127554006)
               

               
               178-648, gnl|Mm7|chr6 (90545102-90545584)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               178-648, gnl|bosTau2|chr7 (16733643-16733200)
               

               
               178-648, gnl|Hg17|chr3 (127554491-127554006)
               

               
               178-648, gnl|Mm7|chr6 (90545102-90545584)

	178-284, - strand, RNAz p=0.986482
	365-601, + strand, RNAz p=0.99986

	178-648, gnl\|bosTau2\|chr7 (16733643-16733200)
	178-648, gnl\|Hg17\|chr3 (127554491-127554006)
	178-648, gnl\|Mm7\|chr6 (90545102-90545584)