Non-Coding RNA Search

Ss1.1-Liv1-LVRM10144H07.5

Sequence:


               
               AAGTGAAGGTGGAAGCGGCCGCTGCGGCAGCAGGTAGGGGGAAGGGCCTGCGAGGGGCCT
CGGGGCCTGGCTGGCGCCAGCGGGGGCCTTGGGACAGTTTGATCCCAATCCCTTGGAGCT
GACGGCTCATGGGAAGGGGCCCGCGAGGAGGGCCGCTGGGCCGCTGCGCACAAAGGCGGA
GGCTCCGCGGGCTGCAGGGCGTGTTTGGGGCGTGCGCGAGACTGTGTCCAGGGTACAGGG
CGCTCAGCGCCAGGCGCGCGAGCGTGTCAGTCCCCACGCGGACGAGCACGGAAGGAACAG
GTCCCTGAGGCTGGGCCCAGGCAGTCCCATCCGACCTGCCCATCCCTTCCCAGCTGGTGC
TCGACCCTTGTGGGTCGTTGGGGGAGGCTGGGAAAAGATTGTGGGAATATCCCTCCCCCC
ACACCCCCTTAAACTAAACTGGTGGGACCCACACCGAGACTGGGCGGAGGAGAAAAGCTA
CGGCATAAGGTTTAAACAAACAAACAAAAATTTTAATGGTGGAACCAGTCGTGCTCTGCT
ACCCTCATTTTGCTTGAGAGCTGTCAAAACTTGGGGATCCCCTAGTCCAGACTAGTTTGC
AAATAAGAAATTGAAGGCAAGAACAGTGACAGATTGAGCCAAGGTCACACTGGTAGAGGC
AGAGCCGGGACTAGAATCCAGAGGTTCTGACACTAGCCATGCTCTTTCCTCCACATCAGC
ACTTCCTTTTCTCCTCCCCGCCCCCCAAACCCTTCCAGCCTGAACTGATACCTGCTCTCT
GTGTTGCCCCGTAGGCCCCTCCAGCCTGTATTGATTCTAGTGGAAGCCTAGAGAAGGCTT
GTTCACTGGACTCAGGGGTACAGATTAGGGCAGGTTAGTGACCGGGCAAGGGTTGGTGAC
CCAGTCGTCCAGATCTTGGCTTTCTGTCCCTAAAAGACCCAGAGTCTGTCTCCCATGTCA
GGTGGAAGCGGCCGCTGCGGCAGCAGACCCCTGAGCCAGGAGGAGTGAGAACCCTGACCC
CTAACCCCACTGCGTCCAGCCAATAGGAGTCCAGTAAGTGACCCCACCCCCAGGCTGCAG
GCCCTTCACTGTGCTGGTCTGCACAGGTGCTCCCCTCCTAACCCGGCAACCGCCAAAAAT
TGAACATATGTTAACTTCTTTGCAGTCAAGAGGAAGCATCTTGGGAGGAAGGGAGGCATT
GGATCAGCTGGACACAGATGTACCTTGTCCTACTTTTCTTGTCTTCCCCCCTCCCCCTCT
TGATCATGTTTCTCAGATCATTTTTAGCCCCTCTCCTTTGAGCTGCTGACCTTGGGACTT
TAGTTGAAGGTCACATTCAATGGTGAACTTTTACTACTCATCCCTTAGTATCTTTAGAGT
ACCCAGTCACTGAGCCACTATTTTCACCCCCTACCAAACTAGAAGTATGGGGTGGCCCCT
AAATATAGTCTGAAAACCCACACACACAGCTGCATTGCTGCTCAACCCCCATTACTTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTGAAGGTGGAAGCGGCCGCTGCGGCAGCAGGTAGGGGGAAGGGCCTGCGAGGGGCCT
CGGGGCCTGGCTGGCGCCAGCGGGGGCCTTGGGACAGTTTGATCCCAATCCCTTGGAGCT
GACGGCTCATGGGAAGGGGCCCGCGAGGAGGGCCGCTGGGCCGCTGCGCACAAAGGCGGA
GGCTCCGCGGGCTGCAGGGCGTGTTTGGGGCGTGCGCGAGACTGTGTCCAGGGTACAGGG
CGCTCAGCGCCAGGCGCGCGAGCGTGTCAGTCCCCACGCGGACGAGCACGGAAGGAACAG
GTCCCTGAGGCTGGGCCCAGGCAGTCCCATCCGACCTGCCCATCCCTTCCCAGCTGGTGC
TCGACCCTTGTGGGTCGTTGGGGGAGGCTGGGAAAAGATTGTGGGAATATCCCTCCCCCC
ACACCCCCTTAAACTAAACTGGTGGGACCCACACCGAGACTGGGCGGAGGAGAAAAGCTA
CGGCATAAGGTTTAAACAAACAAACAAAAATTTTAATGGTGGAACCAGTCGTGCTCTGCT
ACCCTCATTTTGCTTGAGAGCTGTCAAAACTTGGGGATCCCCTAGTCCAGACTAGTTTGC
AAATAAGAAATTGAAGGCAAGAACAGTGACAGATTGAGCCAAGGTCACACTGGTAGAGGC
AGAGCCGGGACTAGAATCCAGAGGTTCTGACACTAGCCATGCTCTTTCCTCCACATCAGC
ACTTCCTTTTCTCCTCCCCGCCCCCCAAACCCTTCCAGCCTGAACTGATACCTGCTCTCT
GTGTTGCCCCGTAGGCCCCTCCAGCCTGTATTGATTCTAGTGGAAGCCTAGAGAAGGCTT
GTTCACTGGACTCAGGGGTACAGATTAGGGCAGGTTAGTGACCGGGCAAGGGTTGGTGAC
CCAGTCGTCCAGATCTTGGCTTTCTGTCCCTAAAAGACCCAGAGTCTGTCTCCCATGTCA
GGTGGAAGCGGCCGCTGCGGCAGCAGACCCCTGAGCCAGGAGGAGTGAGAACCCTGACCC
CTAACCCCACTGCGTCCAGCCAATAGGAGTCCAGTAAGTGACCCCACCCCCAGGCTGCAG
GCCCTTCACTGTGCTGGTCTGCACAGGTGCTCCCCTCCTAACCCGGCAACCGCCAAAAAT
TGAACATATGTTAACTTCTTTGCAGTCAAGAGGAAGCATCTTGGGAGGAAGGGAGGCATT
GGATCAGCTGGACACAGATGTACCTTGTCCTACTTTTCTTGTCTTCCCCCCTCCCCCTCT
TGATCATGTTTCTCAGATCATTTTTAGCCCCTCTCCTTTGAGCTGCTGACCTTGGGACTT
TAGTTGAAGGTCACATTCAATGGTGAACTTTTACTACTCATCCCTTAGTATCTTTAGAGT
ACCCAGTCACTGAGCCACTATTTTCACCCCCTACCAAACTAGAAGTATGGGGTGGCCCCT
AAATATAGTCTGAAAACCCACACACACAGCTGCATTGCTGCTCAACCCCCATTACTTCCA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               346-465, - strand, RNAz p=0.986496
               

               
               871-981, - strand, RNAz p=0.840773
               

               
               1141-1299, - strand, RNAz p=0.999951
               

               
               1340-1500, - strand, RNAz p=0.883352

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               346-465, - strand, RNAz p=0.986496
               

               
               871-981, - strand, RNAz p=0.840773
               

               
               1141-1299, - strand, RNAz p=0.999951
               

               
               1340-1500, - strand, RNAz p=0.883352

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               287-420, + strand, RNAmicro p=0.977516

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               287-420, + strand, RNAmicro p=0.977516

Similar Transcript(s): 3 entry(ies)

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Similar Transcript(s): 3 entry(ies)

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               1141-1299, BP141212 full-length enriched swine cDNA library, adult liver Sus 
(dbj|BP141212.1|), blast E-value=0, identity=92.45% 
               

               
               1141-1299, BP459456 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP459456.1|), blast E-value=0, identity=92.45% 
               

               
               1141-1299, CJ028992 full-length enriched swine cDNA library, adult trachea Sus 
(dbj|CJ028992.1|), blast E-value=0, identity=92.45%

Similar Transcript(s): 3 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1141-1299, BP141212 full-length enriched swine cDNA library, adult liver Sus 
(dbj|BP141212.1|), blast E-value=0, identity=92.45% 
               

               
               1141-1299, BP459456 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP459456.1|), blast E-value=0, identity=92.45% 
               

               
               1141-1299, CJ028992 full-length enriched swine cDNA library, adult trachea Sus 
(dbj|CJ028992.1|), blast E-value=0, identity=92.45%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1500, gnl|bosTau2|chr10 (15555920-15554418)
               

               
               1-1500, gnl|Hg17|chr14 (20563060-20561607)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1500, gnl|bosTau2|chr10 (15555920-15554418)
               

               
               1-1500, gnl|Hg17|chr14 (20563060-20561607)

	346-465, - strand, RNAz p=0.986496
	871-981, - strand, RNAz p=0.840773
	1141-1299, - strand, RNAz p=0.999951
	1340-1500, - strand, RNAz p=0.883352

	1141-1299, BP141212 full-length enriched swine cDNA library, adult liver Sus (dbj\|BP141212.1\|), blast E-value=0, identity=92.45%
	1141-1299, BP459456 full-length enriched swine cDNA library, adult ovary Sus (dbj\|BP459456.1\|), blast E-value=0, identity=92.45%
	1141-1299, CJ028992 full-length enriched swine cDNA library, adult trachea Sus (dbj\|CJ028992.1\|), blast E-value=0, identity=92.45%

	1-1500, gnl\|bosTau2\|chr10 (15555920-15554418)
	1-1500, gnl\|Hg17\|chr14 (20563060-20561607)