Non-Coding RNA Search

Ss1.1-Liv1-LVRM10144H10.5

Sequence:


               
               GGCAGGCGGCGGCTCTGGGTCCACTCAGCGCATCCCGCTCTGCGAGGCAGACATGAGGGC
GGAGGGCATGTCCCTCTTCCTGGCTCTGGGCCTCCTGGTGGCTGGGCTCTGCTCCAGGGT
CCACTGCGTCCCAGCGGATGACCTTGCCTCAAAGATTGTGACCCTGAAGGGCCAGATCAC
GAAGCTGCCAGTGCACAACACCGCCGTCGTCCCCAGCAACACCGACTTCGCCTTCAGCCT
CTACAAGCAGCTGGTTTCTTTAGACCCCAGTAAGAACGTCATCTTCTCCCCGCTGAGCGT
CTCCATAGCCTTGGCCTTCCTGTCTCTGGGGGCCCGAGGCCCCACCCTGACAGAGCTCCT
GGAAGGCCTCAAGTTCAACCTCACAAAGACCCCCGAGGCAGAAATCCACCAGGGCTTCCA
GCACCTCCTGCAGGCCCTCAGCCAACCCAGCAACCTGCTGCAGCTGAACGTGGGCAACGC
CATGTTCGTGGATGAGCATCTGAAGCTGCTGGACAAGTTCGTCCAAGATGCCCGTGAGCT
GTACCACTCCGAGGCCTTCCCCACTAACTTCCAGGATTTAGAAGCTGCCAGAGGACTCAT
TAATGACTATGTGAAGAACAAAACCGAGGGGAAAATCGTGGAGTTGATCAAGAAGCTTTT
CCCTCGGACCGTGGCCGTCCTGGTGAATTACATTTACTTTAAAGCCCAGTGGATGACACA
CTTTGATCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGGCGGCGGCTCTGGGTCCACTCAGCGCATCCCGCTCTGCGAGGCAGACATGAGGGC
GGAGGGCATGTCCCTCTTCCTGGCTCTGGGCCTCCTGGTGGCTGGGCTCTGCTCCAGGGT
CCACTGCGTCCCAGCGGATGACCTTGCCTCAAAGATTGTGACCCTGAAGGGCCAGATCAC
GAAGCTGCCAGTGCACAACACCGCCGTCGTCCCCAGCAACACCGACTTCGCCTTCAGCCT
CTACAAGCAGCTGGTTTCTTTAGACCCCAGTAAGAACGTCATCTTCTCCCCGCTGAGCGT
CTCCATAGCCTTGGCCTTCCTGTCTCTGGGGGCCCGAGGCCCCACCCTGACAGAGCTCCT
GGAAGGCCTCAAGTTCAACCTCACAAAGACCCCCGAGGCAGAAATCCACCAGGGCTTCCA
GCACCTCCTGCAGGCCCTCAGCCAACCCAGCAACCTGCTGCAGCTGAACGTGGGCAACGC
CATGTTCGTGGATGAGCATCTGAAGCTGCTGGACAAGTTCGTCCAAGATGCCCGTGAGCT
GTACCACTCCGAGGCCTTCCCCACTAACTTCCAGGATTTAGAAGCTGCCAGAGGACTCAT
TAATGACTATGTGAAGAACAAAACCGAGGGGAAAATCGTGGAGTTGATCAAGAAGCTTTT
CCCTCGGACCGTGGCCGTCCTGGTGAATTACATTTACTTTAAAGCCCAGTGGATGACACA
CTTTGATCCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61821615|ref|XP_582171.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61821615|ref|XP_582171.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               276-395, - strand, RNAz p=0.63422

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               276-395, - strand, RNAz p=0.63422

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               37-704, gnl|bosTau2|chr21 (40705409-40704769)
               

               
               37-704, gnl|Hg17|chr14 (94150510-94151174)
               

               
               37-704, gnl|Mm7|chr12 (101902962-101903629)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-704, gnl|bosTau2|chr21 (40705409-40704769)
               

               
               37-704, gnl|Hg17|chr14 (94150510-94151174)
               

               
               37-704, gnl|Mm7|chr12 (101902962-101903629)

	37-704, gnl\|bosTau2\|chr21 (40705409-40704769)
	37-704, gnl\|Hg17\|chr14 (94150510-94151174)
	37-704, gnl\|Mm7\|chr12 (101902962-101903629)