Non-Coding RNA Search

Ss1.1-Liv1-LVRM10149H01.5

Sequence:


               
               TACATAAATAGAAGCCGCAGAGGGGAAAAGCCTGTTTTCTCTTTCATTATTTATCACTCT
CTAACCATCTCCAGCTGGGTGAGTAAACAGGCGCATTGGCCCATAATGAGGAACAGACTG
CTGCCGTGGGGCTGCCGGAGGGGCGCGGGGGGGAGCGTGAGAGCGTGTGTGCATGGGTCC
GTCTGTCTGTCTGTCTGTCTGCCCCAGAGAAGGAAGAGTGGGAGTCTGCGATGGAGACGG
CTTGGGGTGGGGGGCGCCTGGTCCCAGCGAGAGCGTCTCCACCTGGCACCCTGGCTGGGG
TGGGGCTGGGTGCCCAGCCGGCTGCCGCCTCCCTACCCTGAGGGTGGCTTGGGGATCGGG
TGTGCTGGATGCAGTCAGAAGGGGAGAGACGGCGTGGGTGGGAGAGGATGTGAAAGGTAC
GAGCCAAGTGTGAGGCCTCGAAGGTGCGGGTCTCCGAGCATGACCCCTGCGGGGTGGCCT
CTGCCGGGGTGGGCGGGCCTGTGAAGGAGGGACTGTAAGACGGAGGCTGAAGGAAAGTGT
GTGCCTGTGAGTGTGTGTATGGGTGTGTGTGTGTGTGTGTGATCCTGGTGGCATACGTGG
GGGGGTGTGATTTTTGTGACTGTAAGAAAGTGTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACATAAATAGAAGCCGCAGAGGGGAAAAGCCTGTTTTCTCTTTCATTATTTATCACTCT
CTAACCATCTCCAGCTGGGTGAGTAAACAGGCGCATTGGCCCATAATGAGGAACAGACTG
CTGCCGTGGGGCTGCCGGAGGGGCGCGGGGGGGAGCGTGAGAGCGTGTGTGCATGGGTCC
GTCTGTCTGTCTGTCTGTCTGCCCCAGAGAAGGAAGAGTGGGAGTCTGCGATGGAGACGG
CTTGGGGTGGGGGGCGCCTGGTCCCAGCGAGAGCGTCTCCACCTGGCACCCTGGCTGGGG
TGGGGCTGGGTGCCCAGCCGGCTGCCGCCTCCCTACCCTGAGGGTGGCTTGGGGATCGGG
TGTGCTGGATGCAGTCAGAAGGGGAGAGACGGCGTGGGTGGGAGAGGATGTGAAAGGTAC
GAGCCAAGTGTGAGGCCTCGAAGGTGCGGGTCTCCGAGCATGACCCCTGCGGGGTGGCCT
CTGCCGGGGTGGGCGGGCCTGTGAAGGAGGGACTGTAAGACGGAGGCTGAAGGAAAGTGT
GTGCCTGTGAGTGTGTGTATGGGTGTGTGTGTGTGTGTGTGATCCTGGTGGCATACGTGG
GGGGGTGTGATTTTTGTGACTGTAAGAAAGTGTGAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               315-418, + strand, RNAz p=0.672626

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               315-418, + strand, RNAz p=0.672626

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               45-636, gnl|bosTau2|chr23 (13931244-13930633)
               

               
               45-636, gnl|Hg17|chr6 (41607730-41608329)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-636, gnl|bosTau2|chr23 (13931244-13930633)
               

               
               45-636, gnl|Hg17|chr6 (41607730-41608329)

	45-636, gnl\|bosTau2\|chr23 (13931244-13930633)
	45-636, gnl\|Hg17\|chr6 (41607730-41608329)