Non-Coding RNA Search

Ss1.1-Liv1-LVRM10154A07.5

Sequence:


               
               GTGTTTGTCATGCTGAAAATGCTTCATGCTGGTGAGGCTTCTTCGCTGGCAGTGGGTGTA
AAGGGACGCGTCTGCGGAGAGATTTGAGGAAAATGCGGTGACCGTCCGAGGGACCCTGTC
TGTTCACAACCACATGCTTTGGGGAGCTTCAGCTTCTGTTTTTTTTTTTTTTTTTTTTTT
TTCTCCCCTGTGTTTGGTGCCCAGCTTCCTTGTGTGGTTCATGGATTTGTTTGGCAGGTA
CCTGTTGACAGATGCTCCCGTGGACAAGGCCAGGTCCTTGGCCCTGTGGGGCTTTTGTTC
TAGTGGGGGGACAGACTCTAACGCACCCCACCCCCTCACCGTGGACCTGTCCTCTGACCT
TGGTGGCTCCGATGGGTACTCCATGGCTCTGTGATCTGTCCTTCTGGAGTGTCCCATCAG
CCCCCCAGAATGAAGGACCTTGTGCGTGTTCTGTGTCCGTAGCTGGGCTCGGTGGCCTGC
TCGCCCGTGGACTGTCCCATCACCTGCACCTACCCTTTCCACCCTGACGGGGAGTGCTGC
CCAGTGTGCCGAGACTGCAACTACGAGGGCAGGAAGGTGGCGAACGGCCAGGTGTTCACC
TTGGACGATGAGCCCTGTACCCAGTGCATATGCCAGCTGGGAGAAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTTTGTCATGCTGAAAATGCTTCATGCTGGTGAGGCTTCTTCGCTGGCAGTGGGTGTA
AAGGGACGCGTCTGCGGAGAGATTTGAGGAAAATGCGGTGACCGTCCGAGGGACCCTGTC
TGTTCACAACCACATGCTTTGGGGAGCTTCAGCTTCTGTTTTTTTTTTTTTTTTTTTTTT
TTCTCCCCTGTGTTTGGTGCCCAGCTTCCTTGTGTGGTTCATGGATTTGTTTGGCAGGTA
CCTGTTGACAGATGCTCCCGTGGACAAGGCCAGGTCCTTGGCCCTGTGGGGCTTTTGTTC
TAGTGGGGGGACAGACTCTAACGCACCCCACCCCCTCACCGTGGACCTGTCCTCTGACCT
TGGTGGCTCCGATGGGTACTCCATGGCTCTGTGATCTGTCCTTCTGGAGTGTCCCATCAG
CCCCCCAGAATGAAGGACCTTGTGCGTGTTCTGTGTCCGTAGCTGGGCTCGGTGGCCTGC
TCGCCCGTGGACTGTCCCATCACCTGCACCTACCCTTTCCACCCTGACGGGGAGTGCTGC
CCAGTGTGCCGAGACTGCAACTACGAGGGCAGGAAGGTGGCGAACGGCCAGGTGTTCACC
TTGGACGATGAGCCCTGTACCCAGTGCATATGCCAGCTGGGAGAAGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               197-365, - strand, RNAz p=0.999953

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-365, - strand, RNAz p=0.999953

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               197-553, gnl|bosTau2|chr29 (30846440-30846084)
               

               
               197-553, gnl|Hg17|chr11 (60789537-60789170)
               

               
               197-553, gnl|Mm7|chr19 (10339274-10339636)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               197-553, gnl|bosTau2|chr29 (30846440-30846084)
               

               
               197-553, gnl|Hg17|chr11 (60789537-60789170)
               

               
               197-553, gnl|Mm7|chr19 (10339274-10339636)

	197-553, gnl\|bosTau2\|chr29 (30846440-30846084)
	197-553, gnl\|Hg17\|chr11 (60789537-60789170)
	197-553, gnl\|Mm7\|chr19 (10339274-10339636)