Ss1.1-Liv1-LVRM10154G06.5
|
TTTTTTCTCTCAGTGAAGCGCGCACGTTGAGCCGGCTTCACCGCTGCTTCTCTCAGGCAG
CCTTGAGATCATGTCTTCCAAGAAGAACAGAAAACGCCTGAGCCAAAGCACCGAGAATAG
TTCGCCCTCGGCCTCCGCTGCTTCCTTTCCTGAGGGGGCCACAGCTTCAGCCGTGGCGGC
CGGGACTTTGGTGGTGATCAACTTCCTAGAAAAGGATGACAAAGTTCCTAAAACATTCCA
GAATTCCCTTGCTCAACTTGGACTCAACACCATGAAGTCTGCAAATATATGTATTGGTCG
ACCAGTGTTGCTTACCAGTTTGGATGGAAAGCAAGGAGTCTATACGGCTTGGCCTGTGGC
AGGATTTCCTGGAGGGAAGGTTGGCCTGAGTGAAATGGCACAGAAGAATGTGGGTGTGAG
AGTTGGTGATGCCATCCACGTCCAGCCTGTTTTGGGTGCTGTGCTGCAAGCTGAGGAGAT
GGATGTGGCACTCAGTGACAAAAATGCAGATATTAATGAAGAACAGTTGACTGGTTGTCT
TCTGAGAAAACTAGATGGCAAGATTGTTTTACCAGGCAATTTTCTGTACTGTACATTCTA
TGGACGACCATGCAAGTTGCAAGTGTTGGGAATAAAAGGGGCAGTTGGCACGATGTTGAG
AAAGTCTCAGAATGACCCTGACACTGATGCCGGTGGAATGGCTTCTGAGCCATCCAGCAT
AACAACCAGTACCCTGGATTTATCCTTACAGCTAAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTTTTCTCTCAGTGAAGCGCGCACGTTGAGCCGGCTTCACCGCTGCTTCTCTCAGGCAG
CCTTGAGATCATGTCTTCCAAGAAGAACAGAAAACGCCTGAGCCAAAGCACCGAGAATAG
TTCGCCCTCGGCCTCCGCTGCTTCCTTTCCTGAGGGGGCCACAGCTTCAGCCGTGGCGGC
CGGGACTTTGGTGGTGATCAACTTCCTAGAAAAGGATGACAAAGTTCCTAAAACATTCCA
GAATTCCCTTGCTCAACTTGGACTCAACACCATGAAGTCTGCAAATATATGTATTGGTCG
ACCAGTGTTGCTTACCAGTTTGGATGGAAAGCAAGGAGTCTATACGGCTTGGCCTGTGGC
AGGATTTCCTGGAGGGAAGGTTGGCCTGAGTGAAATGGCACAGAAGAATGTGGGTGTGAG
AGTTGGTGATGCCATCCACGTCCAGCCTGTTTTGGGTGCTGTGCTGCAAGCTGAGGAGAT
GGATGTGGCACTCAGTGACAAAAATGCAGATATTAATGAAGAACAGTTGACTGGTTGTCT
TCTGAGAAAACTAGATGGCAAGATTGTTTTACCAGGCAATTTTCTGTACTGTACATTCTA
TGGACGACCATGCAAGTTGCAAGTGTTGGGAATAAAAGGGGCAGTTGGCACGATGTTGAG
AAAGTCTCAGAATGACCCTGACACTGATGCCGGTGGAATGGCTTCTGAGCCATCCAGCAT
AACAACCAGTACCCTGGATTTATCCTTACAGCTAAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
381-474, + strand, RNAmicro p=0.997953 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
381-474, + strand, RNAmicro p=0.997953 |
|
382-495, BP444765 full-length enriched swine cDNA library, adult liver Sus
(dbj|BP444765.1|), blast E-value=0, identity=100% |
|
382-495, BP453374 full-length enriched swine cDNA library, adult liver Sus
(dbj|BP453374.1|), blast E-value=0, identity=100% |
|
383-492, DB132706 THYMU3 Homo sapiens cDNA clone THYMU3002771 5', mRNA
(dbj|DB132706.1|), blast E-value=2e-30, identity=90.91% |
|
383-492, DB141152 THYMU3 Homo sapiens cDNA clone THYMU3014446 5', mRNA
(dbj|DB141152.1|), blast E-value=2e-30, identity=90.91% |
|
383-492, DB216797 TRACH3 Homo sapiens cDNA clone TRACH3005974 5', mRNA
(dbj|DB216797.1|), blast E-value=2e-30, identity=90.91% |
|
383-492, DB263509 UTERU2 Homo sapiens cDNA clone UTERU2021946 5', mRNA
(dbj|DB263509.1|), blast E-value=2e-30, identity=90.91% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
382-495, BP444765 full-length enriched swine cDNA library, adult liver Sus
(dbj|BP444765.1|), blast E-value=0, identity=100% |
|
382-495, BP453374 full-length enriched swine cDNA library, adult liver Sus
(dbj|BP453374.1|), blast E-value=0, identity=100% |
|
383-492, DB132706 THYMU3 Homo sapiens cDNA clone THYMU3002771 5', mRNA
(dbj|DB132706.1|), blast E-value=2e-30, identity=90.91% |
|
383-492, DB141152 THYMU3 Homo sapiens cDNA clone THYMU3014446 5', mRNA
(dbj|DB141152.1|), blast E-value=2e-30, identity=90.91% |
|
383-492, DB216797 TRACH3 Homo sapiens cDNA clone TRACH3005974 5', mRNA
(dbj|DB216797.1|), blast E-value=2e-30, identity=90.91% |
|
383-492, DB263509 UTERU2 Homo sapiens cDNA clone UTERU2021946 5', mRNA
(dbj|DB263509.1|), blast E-value=2e-30, identity=90.91% |
|
338-495, gnl|bosTau2|chr17 (20050365-20050208) |
|
338-495, gnl|canFam2|chr19 (20372200-20372019) |
|
338-495, gnl|dasNov1|scaffold_10689 (19380-19199) |
|
338-495, gnl|echTel1|scaffold_180528 (443-624) |
|
338-495, gnl|fr1|chrUn (202580162-202580332) |
|
338-495, gnl|galGal2|chr4 (54099305-54099135) |
|
338-495, gnl|hg17|chr4 (124207785-124207964) |
|
338-495, gnl|Hg17|chr4 (124207800-124207957) |
|
338-495, gnl|mm7|chr3 (37236854-37237034) |
|
338-495, gnl|Mm7|chr3 (37236870-37237027) |
|
338-495, gnl|monDom2|scaffold_32 (4308612-4308435) |
|
338-495, gnl|oryCun1|scaffold_174921 (25799-25619) |
|
338-495, gnl|panTro1|chr3 (141037612-141037791) |
|
338-495, gnl|rheMac2|chr5 (115295260-115295439) |
|
338-495, gnl|rn3|chr2 (123918673-123918853) |
|
338-495, gnl|tetNig1|chrUn_random (117093548-117093702) |
|
338-495, gnl|xenTro1|scaffold_762 (274253-274082) |
| |
|
553-756, gnl|bosTau2|chr17 (20045932-20045729) |
|
553-756, gnl|Hg17|chr4 (124212855-124213058) |
|
553-756, gnl|Mm7|chr3 (37242412-37242615) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
338-495, gnl|bosTau2|chr17 (20050365-20050208) |
|
338-495, gnl|canFam2|chr19 (20372200-20372019) |
|
338-495, gnl|dasNov1|scaffold_10689 (19380-19199) |
|
338-495, gnl|echTel1|scaffold_180528 (443-624) |
|
338-495, gnl|fr1|chrUn (202580162-202580332) |
|
338-495, gnl|galGal2|chr4 (54099305-54099135) |
|
338-495, gnl|hg17|chr4 (124207785-124207964) |
|
338-495, gnl|Hg17|chr4 (124207800-124207957) |
|
338-495, gnl|mm7|chr3 (37236854-37237034) |
|
338-495, gnl|Mm7|chr3 (37236870-37237027) |
|
338-495, gnl|monDom2|scaffold_32 (4308612-4308435) |
|
338-495, gnl|oryCun1|scaffold_174921 (25799-25619) |
|
338-495, gnl|panTro1|chr3 (141037612-141037791) |
|
338-495, gnl|rheMac2|chr5 (115295260-115295439) |
|
338-495, gnl|rn3|chr2 (123918673-123918853) |
|
338-495, gnl|tetNig1|chrUn_random (117093548-117093702) |
|
338-495, gnl|xenTro1|scaffold_762 (274253-274082) |
| |
|
553-756, gnl|bosTau2|chr17 (20045932-20045729) |
|
553-756, gnl|Hg17|chr4 (124212855-124213058) |
|
553-756, gnl|Mm7|chr3 (37242412-37242615) |
