Non-Coding RNA Search

Ss1.1-Liv1-LVRM10155G06.5

Sequence:


               
               CTACTGGTTTATGTGTTTAAGCCCTGAACTAACTGCTAGATCTCAAGGCCACTGAATACA
GAGCCTTTTACCCCTCTATCACTGGCAAGCAAGTATATTTCCCCCTAAGAGTGGCTTATT
TGCTAGTTTATGTGCATTAAGCACTTCTGTGTATAATTGTGCCTGCCTTTTCCTCTCCTG
CAAATCCTCAGTAGAATTAATCACTTATTATGGTCCCTTTAAACAAGACAGAACAGATCT
CTGATTAAAGCTTAGGAGCTTCCTTTATAACAGTTCTTGGCTCAGGTAGCCCATGTACTT
TTCAAAAAGACGTCCCATAAATGTCCTAAAACTGGCTTCAGAGCCATCCATGGTGTCCTC
TATGAAGAGCTCATGAAGCAGTGTGGAAGGAGGAAGGAGGAAGCATTATCCAGGAGGGGC
CAGAAGGCAATTCCCTTTCATTCCCCAGTGTAAGTTTTACTTTCCCCAAAGAGGGTGGTG
GAAACTCCCTTGGGACTGTGCCAAGTGGCATGAGGGCCAATGGCGAAGTCCACACGGGAA
CGAGAGACGTAAGTAATTAAGATGCCCAAGGCCTCCCACCCTGCCCTGGATCGATGCCTG
TTTGCTGAGACAAGCTGCAGGCCCACGCCTCGTCCTCCTGCCAAGGCTCAGCTCTTTGTT
GACAAAATTTCTCGTCTGCTTCCCGTATGATCCCGCGTTACGTGCCGGCTTCTGTGGGTT
GTTCAAGTCCCTGGTTGTGTCTTTGCAGGTCCTGGCCTGTCTGTACCTTCCTCCCATGGG
ACCGGCTTCAGGCACAGGCCCCGGGGGTACTCAGGGTGCCAGGATTCAGCGCCGCACAGC
ATTTAGGTACAGCTTTCCCATGTCCTGGAGTTTTACGTTCCCTTTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACTGGTTTATGTGTTTAAGCCCTGAACTAACTGCTAGATCTCAAGGCCACTGAATACA
GAGCCTTTTACCCCTCTATCACTGGCAAGCAAGTATATTTCCCCCTAAGAGTGGCTTATT
TGCTAGTTTATGTGCATTAAGCACTTCTGTGTATAATTGTGCCTGCCTTTTCCTCTCCTG
CAAATCCTCAGTAGAATTAATCACTTATTATGGTCCCTTTAAACAAGACAGAACAGATCT
CTGATTAAAGCTTAGGAGCTTCCTTTATAACAGTTCTTGGCTCAGGTAGCCCATGTACTT
TTCAAAAAGACGTCCCATAAATGTCCTAAAACTGGCTTCAGAGCCATCCATGGTGTCCTC
TATGAAGAGCTCATGAAGCAGTGTGGAAGGAGGAAGGAGGAAGCATTATCCAGGAGGGGC
CAGAAGGCAATTCCCTTTCATTCCCCAGTGTAAGTTTTACTTTCCCCAAAGAGGGTGGTG
GAAACTCCCTTGGGACTGTGCCAAGTGGCATGAGGGCCAATGGCGAAGTCCACACGGGAA
CGAGAGACGTAAGTAATTAAGATGCCCAAGGCCTCCCACCCTGCCCTGGATCGATGCCTG
TTTGCTGAGACAAGCTGCAGGCCCACGCCTCGTCCTCCTGCCAAGGCTCAGCTCTTTGTT
GACAAAATTTCTCGTCTGCTTCCCGTATGATCCCGCGTTACGTGCCGGCTTCTGTGGGTT
GTTCAAGTCCCTGGTTGTGTCTTTGCAGGTCCTGGCCTGTCTGTACCTTCCTCCCATGGG
ACCGGCTTCAGGCACAGGCCCCGGGGGTACTCAGGGTGCCAGGATTCAGCGCCGCACAGC
ATTTAGGTACAGCTTTCCCATGTCCTGGAGTTTTACGTTCCCTTTTAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               429-583, + strand, RNAz p=0.998263

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               429-583, + strand, RNAz p=0.998263

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-887, gnl|bosTau2|chr14 (27720527-27721395)
               

               
               8-887, gnl|Hg17|chr8 (119028699-119027817)
               

               
               8-887, gnl|Mm7|chr15 (53253740-53252909)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-887, gnl|bosTau2|chr14 (27720527-27721395)
               

               
               8-887, gnl|Hg17|chr8 (119028699-119027817)
               

               
               8-887, gnl|Mm7|chr15 (53253740-53252909)

	8-887, gnl\|bosTau2\|chr14 (27720527-27721395)
	8-887, gnl\|Hg17\|chr8 (119028699-119027817)
	8-887, gnl\|Mm7\|chr15 (53253740-53252909)