Ss1.1-Liv1-LVRM1A110088.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCCTATTCCTCTCTACACCATGAGGGGACATCCACGGCCTAACCCAGTCTGGATTCTGC TTTTCTTGCTCCTTCCCAGAGATGCTTCCGCCGACTCCAAACCACAGTACCTGGTGCTGG TGCCATCACAGCTGTATGCTGGGGTTCCTGAGAAGGCTTGTGTCGTGCTTAACCACCTGA ATGAGACAGTGACACTGACAATAACTCTGGAATATGAGTCGCAGGGCATGAATCTCCTGA CGGACACGCAGGCAAAGAACGCTTTCTACTGCAGCACCTTCATGATTCCGGAGCAGTCCT CATCTTCCTCAGCATCCATTACCGTGCAGGTGGATGGGCCCACCCAGAAGTTCATGAAGA GGAAGCCAATGCACGTAACAAAAATAGAAAGCCTAGTCTTTGTCCAGACAGACAAACCCA TCTATAAACCAGGACAGAAAGTGCAATGGCGTGTGGTCTCTCTGGACATCAGTTTCCGCC CTTTGAATGAAACGTTCCCGGTGGCATATATTGAGAATCCCAAGAAGAACCGAATTTTCC AATGGCACAGACTCACACTGCAAGGGGGACTCAGCCAGCTCTCTTTCCCACTCTCTGAGG AGCCCACGCTGGGTTCCTACAAGATCATACTGCAGAAGGAATCAGGGAGAAAAATAGAGC ACTCCTTTAAGGTGGATGAATATGTTTTGCCCAAATTTGAGGTCCAAGTGAAAATGCCCA AGGTTATTGGTTTTCTAGAAGATGAATTTGAGGTATCCGTCTGTGGCCTATACACCTATG GAAAGCCTGTCCGTGGTCTGGTGACAATTAATATATGCAGAAAATATTCACGATATAGTT CTACCTGCCATGGAGAATATTCACAAAATATCTGTGAAGAATTTAGCCAACAGACAGACA ATGAAGGCTGTTTCACAAAACTTGTAAAGACTAAAATATTCCAGCTGAGACAAAGAGGGT ATGACATGACCTTACAAGTGGAGGCCAAGGTCAAAGAAGAGGGAACAGGGTTGGAATTAA CTGGACAAGCCTCGTCTAAAATCACAAATTCCTTAAGCAAACTGGAATTTACCCAAATAG ATTCACATTACAGGCGTGGGCTCCCTTTCTTTGGGCAGGTTCTTCTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCCTATTCCTCTCTACACCATGAGGGGACATCCACGGCCTAACCCAGTCTGGATTCTGC TTTTCTTGCTCCTTCCCAGAGATGCTTCCGCCGACTCCAAACCACAGTACCTGGTGCTGG TGCCATCACAGCTGTATGCTGGGGTTCCTGAGAAGGCTTGTGTCGTGCTTAACCACCTGA ATGAGACAGTGACACTGACAATAACTCTGGAATATGAGTCGCAGGGCATGAATCTCCTGA CGGACACGCAGGCAAAGAACGCTTTCTACTGCAGCACCTTCATGATTCCGGAGCAGTCCT CATCTTCCTCAGCATCCATTACCGTGCAGGTGGATGGGCCCACCCAGAAGTTCATGAAGA GGAAGCCAATGCACGTAACAAAAATAGAAAGCCTAGTCTTTGTCCAGACAGACAAACCCA TCTATAAACCAGGACAGAAAGTGCAATGGCGTGTGGTCTCTCTGGACATCAGTTTCCGCC CTTTGAATGAAACGTTCCCGGTGGCATATATTGAGAATCCCAAGAAGAACCGAATTTTCC AATGGCACAGACTCACACTGCAAGGGGGACTCAGCCAGCTCTCTTTCCCACTCTCTGAGG AGCCCACGCTGGGTTCCTACAAGATCATACTGCAGAAGGAATCAGGGAGAAAAATAGAGC ACTCCTTTAAGGTGGATGAATATGTTTTGCCCAAATTTGAGGTCCAAGTGAAAATGCCCA AGGTTATTGGTTTTCTAGAAGATGAATTTGAGGTATCCGTCTGTGGCCTATACACCTATG GAAAGCCTGTCCGTGGTCTGGTGACAATTAATATATGCAGAAAATATTCACGATATAGTT CTACCTGCCATGGAGAATATTCACAAAATATCTGTGAAGAATTTAGCCAACAGACAGACA ATGAAGGCTGTTTCACAAAACTTGTAAAGACTAAAATATTCCAGCTGAGACAAAGAGGGT ATGACATGACCTTACAAGTGGAGGCCAAGGTCAAAGAAGAGGGAACAGGGTTGGAATTAA CTGGACAAGCCTCGTCTAAAATCACAAATTCCTTAAGCAAACTGGAATTTACCCAAATAG ATTCACATTACAGGCGTGGGCTCCCTTTCTTTGGGCAGGTTCTTCTGG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 546-665, - strand, RNAz p=0.58097 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 546-665, - strand, RNAz p=0.58097 |
| Aligned organism(s): 99 entry(ies) | More info |
| Aligned organism(s): 99 entry(ies) | Help | Less info |
| 1-103, gnl|bosTau2|chr5 (59385400-59385502) | |
| 1-103, gnl|canFam2|chr27 (39553704-39553543) | |
| 1-103, gnl|dasNov1|scaffold_130335 (1111-1272) | |
| 1-103, gnl|echTel1|scaffold_315425 (47690-47530) | |
| 1-103, gnl|galGal2|chr1 (68248473-68248647) | |
| 1-103, gnl|hg17|chr12 (9321089-9321249) | |
| 1-103, gnl|Hg17|chr12 (9321196-9321094) | |
| 1-103, gnl|loxAfr1|scaffold_6357 (46792-46953) | |
| 1-103, gnl|mm7|chr6 (128549813-128549969) | |
| 1-103, gnl|Mm7|chr6 (128549920-128549818) | |
| 1-103, gnl|oryCun1|scaffold_142100 (10745-10905) | |
| 1-103, gnl|panTro1|chrUn_random (57772126-57771965) | |
| 1-103, gnl|rheMac2|chr11 (9427712-9427872) | |
| 1-103, gnl|rn3|chr4 (165795940-165796099) | |
| 105-282, gnl|bosTau2|chr5 (59387687-59387864) | |
| 105-282, gnl|Hg17|chr12 (9319683-9319503) | |
| 105-282, gnl|Mm7|chr6 (128548536-128548356) | |
| 300-441, gnl|bosTau2|chr5 (59389021-59389162) | |
| 300-441, gnl|canFam2|chr27 (39557213-39557109) | |
| 300-441, gnl|canFam2|chr27 (39624234-39624053) | |
| 300-441, gnl|danRer3|chrNA (89155525-89155402) | |
| 300-441, gnl|dasNov1|scaffold_14507 (3250-3360) | |
| 300-441, gnl|dasNov1|scaffold_14507 (3196-3377) | |
| 300-441, gnl|echTel1|scaffold_315425 (51239-51135) | |
| 300-441, gnl|echTel1|scaffold_315425 (51286-51118) | |
| 300-441, gnl|galGal2|chr1 (68246260-68246370) | |
| 300-441, gnl|galGal2|chr1 (68246206-68246382) | |
| 300-441, gnl|hg17|chr12 (9318346-9318450) | |
| 300-441, gnl|hg17|chr12 (9246379-9246560) | |
| 300-441, gnl|Hg17|chr12 (9318445-9318301) | |
| 300-441, gnl|loxAfr1|scaffold_17626 (31913-31732) | |
| 300-441, gnl|loxAfr1|scaffold_6357 (41870-41974) | |
| 300-441, gnl|mm7|chr6 (128547254-128547358) | |
| 300-441, gnl|mm7|chr6 (121664466-121664282) | |
| 300-441, gnl|Mm7|chr6 (128547353-128547209) | |
| 300-441, gnl|monDom2|scaffold_31 (11710458-11710378) | |
| 300-441, gnl|monDom2|scaffold_31 (11710511-11710330) | |
| 300-441, gnl|oryCun1|scaffold_142100 (7539-7643) | |
| 300-441, gnl|oryCun1|scaffold_214581 (89288-89112) | |
| 300-441, gnl|panTro1|chrUn_random (57774850-57774746) | |
| 300-441, gnl|panTro1|chrUn_random (57852092-57851911) | |
| 300-441, gnl|rheMac2|chr11 (9424785-9424889) | |
| 300-441, gnl|rheMac2|chr11 (9346867-9347048) | |
| 300-441, gnl|rn3|chr4 (165793639-165793743) | |
| 300-441, gnl|rn3|chr4 (158873407-158873575) | |
| 507-684, gnl|bosTau2|chr5 (59390965-59391142) | |
| 507-684, gnl|canFam2|chr27 (39558608-39558448) | |
| 507-684, gnl|canFam2|chr27 (39626137-39626020) | |
| 507-684, gnl|danRer3|chrNA (89159694-89159536) | |
| 507-684, gnl|dasNov1|scaffold_10192 (41432-41312) | |
| 507-684, gnl|dasNov1|scaffold_44058 (100-260) | |
| 507-684, gnl|echTel1|scaffold_287013 (42923-43043) | |
| 507-684, gnl|echTel1|scaffold_315425 (57085-56933) | |
| 507-684, gnl|galGal2|chr1 (68238882-68239045) | |
| 507-684, gnl|galGal2|chr1 (68244237-68244357) | |
| 507-684, gnl|hg17|chr12 (9316961-9317121) | |
| 507-684, gnl|hg17|chr12 (9244745-9244865) | |
| 507-684, gnl|Hg17|chr12 (9317089-9316912) | |
| 507-684, gnl|loxAfr1|scaffold_6357 (40428-40587) | |
| 507-684, gnl|loxAfr1|scaffold_6357 (40371-40489) | |
| 507-684, gnl|mm7|chr6 (128545304-128545461) | |
| 507-684, gnl|Mm7|chr6 (128545430-128545255) | |
| 507-684, gnl|monDom2|scaffold_31 (11712670-11712535) | |
| 507-684, gnl|monDom2|scaffold_31 (11712726-11712609) | |
| 507-684, gnl|oryCun1|scaffold_142100 (6128-6287) | |
| 507-684, gnl|oryCun1|scaffold_187218 (38776-38656) | |
| 507-684, gnl|panTro1|chrUn_random (57776235-57776075) | |
| 507-684, gnl|panTro1|chrUn_random (57853727-57853607) | |
| 507-684, gnl|rheMac2|chr11 (9423413-9423573) | |
| 507-684, gnl|rheMac2|chr11 (9345291-9345411) | |
| 507-684, gnl|rn3|chr4 (165791700-165791857) | |
| 507-684, gnl|rn3|chr4 (165791641-165791761) | |
| 507-684, gnl|tetNig1|chr16 (8124614-8124741) | |
| 770-893, gnl|bosTau2|chr5 (59397890-59398013) | |
| 770-893, gnl|canFam2|chr27 (39562427-39562290) | |
| 770-893, gnl|canFam2|chr27 (39630652-39630581) | |
| 770-893, gnl|dasNov1|scaffold_10192 (44147-44076) | |
| 770-893, gnl|dasNov1|scaffold_15693 (86045-85911) | |
| 770-893, gnl|echTel1|scaffold_287013 (41240-41321) | |
| 770-893, gnl|echTel1|scaffold_315425 (67752-67615) | |
| 770-893, gnl|galGal2|chr1 (68237431-68237562) | |
| 770-893, gnl|galGal2|chr1 (68242038-68242121) | |
| 770-893, gnl|hg17|chr12 (9314232-9314369) | |
| 770-893, gnl|hg17|chr12 (9240868-9240939) | |
| 770-893, gnl|Hg17|chr12 (9314356-9314233) | |
| 770-893, gnl|loxAfr1|scaffold_6357 (36068-36205) | |
| 770-893, gnl|loxAfr1|scaffold_6357 (36062-36145) | |
| 770-893, gnl|mm7|chr6 (128542630-128542767) | |
| 770-893, gnl|Mm7|chr6 (128542754-128542631) | |
| 770-893, gnl|monDom2|scaffold_31 (11722540-11722406) | |
| 770-893, gnl|monDom2|scaffold_31 (11722546-11722466) | |
| 770-893, gnl|oryCun1|scaffold_187218 (41867-41811) | |
| 770-893, gnl|oryCun1|scaffold_85466 (698-565) | |
| 770-893, gnl|panTro1|chrUn_random (57778966-57778829) | |
| 770-893, gnl|panTro1|chrUn_random (57857875-57857804) | |
| 770-893, gnl|rheMac2|chr11 (9419715-9419852) | |
| 770-893, gnl|rheMac2|chr11 (9248886-9248966) | |
| 770-893, gnl|rn3|chr4 (165787364-165787501) | |
| 770-893, gnl|rn3|chr4 (158356921-158356847) |
| Aligned organism(s): 99 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-103, gnl|bosTau2|chr5 (59385400-59385502) | |
| 1-103, gnl|canFam2|chr27 (39553704-39553543) | |
| 1-103, gnl|dasNov1|scaffold_130335 (1111-1272) | |
| 1-103, gnl|echTel1|scaffold_315425 (47690-47530) | |
| 1-103, gnl|galGal2|chr1 (68248473-68248647) | |
| 1-103, gnl|hg17|chr12 (9321089-9321249) | |
| 1-103, gnl|Hg17|chr12 (9321196-9321094) | |
| 1-103, gnl|loxAfr1|scaffold_6357 (46792-46953) | |
| 1-103, gnl|mm7|chr6 (128549813-128549969) | |
| 1-103, gnl|Mm7|chr6 (128549920-128549818) | |
| 1-103, gnl|oryCun1|scaffold_142100 (10745-10905) | |
| 1-103, gnl|panTro1|chrUn_random (57772126-57771965) | |
| 1-103, gnl|rheMac2|chr11 (9427712-9427872) | |
| 1-103, gnl|rn3|chr4 (165795940-165796099) | |
| 105-282, gnl|bosTau2|chr5 (59387687-59387864) | |
| 105-282, gnl|Hg17|chr12 (9319683-9319503) | |
| 105-282, gnl|Mm7|chr6 (128548536-128548356) | |
| 300-441, gnl|bosTau2|chr5 (59389021-59389162) | |
| 300-441, gnl|canFam2|chr27 (39557213-39557109) | |
| 300-441, gnl|canFam2|chr27 (39624234-39624053) | |
| 300-441, gnl|danRer3|chrNA (89155525-89155402) | |
| 300-441, gnl|dasNov1|scaffold_14507 (3250-3360) | |
| 300-441, gnl|dasNov1|scaffold_14507 (3196-3377) | |
| 300-441, gnl|echTel1|scaffold_315425 (51239-51135) | |
| 300-441, gnl|echTel1|scaffold_315425 (51286-51118) | |
| 300-441, gnl|galGal2|chr1 (68246260-68246370) | |
| 300-441, gnl|galGal2|chr1 (68246206-68246382) | |
| 300-441, gnl|hg17|chr12 (9318346-9318450) | |
| 300-441, gnl|hg17|chr12 (9246379-9246560) | |
| 300-441, gnl|Hg17|chr12 (9318445-9318301) | |
| 300-441, gnl|loxAfr1|scaffold_17626 (31913-31732) | |
| 300-441, gnl|loxAfr1|scaffold_6357 (41870-41974) | |
| 300-441, gnl|mm7|chr6 (128547254-128547358) | |
| 300-441, gnl|mm7|chr6 (121664466-121664282) | |
| 300-441, gnl|Mm7|chr6 (128547353-128547209) | |
| 300-441, gnl|monDom2|scaffold_31 (11710458-11710378) | |
| 300-441, gnl|monDom2|scaffold_31 (11710511-11710330) | |
| 300-441, gnl|oryCun1|scaffold_142100 (7539-7643) | |
| 300-441, gnl|oryCun1|scaffold_214581 (89288-89112) | |
| 300-441, gnl|panTro1|chrUn_random (57774850-57774746) | |
| 300-441, gnl|panTro1|chrUn_random (57852092-57851911) | |
| 300-441, gnl|rheMac2|chr11 (9424785-9424889) | |
| 300-441, gnl|rheMac2|chr11 (9346867-9347048) | |
| 300-441, gnl|rn3|chr4 (165793639-165793743) | |
| 300-441, gnl|rn3|chr4 (158873407-158873575) | |
| 507-684, gnl|bosTau2|chr5 (59390965-59391142) | |
| 507-684, gnl|canFam2|chr27 (39558608-39558448) | |
| 507-684, gnl|canFam2|chr27 (39626137-39626020) | |
| 507-684, gnl|danRer3|chrNA (89159694-89159536) | |
| 507-684, gnl|dasNov1|scaffold_10192 (41432-41312) | |
| 507-684, gnl|dasNov1|scaffold_44058 (100-260) | |
| 507-684, gnl|echTel1|scaffold_287013 (42923-43043) | |
| 507-684, gnl|echTel1|scaffold_315425 (57085-56933) | |
| 507-684, gnl|galGal2|chr1 (68238882-68239045) | |
| 507-684, gnl|galGal2|chr1 (68244237-68244357) | |
| 507-684, gnl|hg17|chr12 (9316961-9317121) | |
| 507-684, gnl|hg17|chr12 (9244745-9244865) | |
| 507-684, gnl|Hg17|chr12 (9317089-9316912) | |
| 507-684, gnl|loxAfr1|scaffold_6357 (40428-40587) | |
| 507-684, gnl|loxAfr1|scaffold_6357 (40371-40489) | |
| 507-684, gnl|mm7|chr6 (128545304-128545461) | |
| 507-684, gnl|Mm7|chr6 (128545430-128545255) | |
| 507-684, gnl|monDom2|scaffold_31 (11712670-11712535) | |
| 507-684, gnl|monDom2|scaffold_31 (11712726-11712609) | |
| 507-684, gnl|oryCun1|scaffold_142100 (6128-6287) | |
| 507-684, gnl|oryCun1|scaffold_187218 (38776-38656) | |
| 507-684, gnl|panTro1|chrUn_random (57776235-57776075) | |
| 507-684, gnl|panTro1|chrUn_random (57853727-57853607) | |
| 507-684, gnl|rheMac2|chr11 (9423413-9423573) | |
| 507-684, gnl|rheMac2|chr11 (9345291-9345411) | |
| 507-684, gnl|rn3|chr4 (165791700-165791857) | |
| 507-684, gnl|rn3|chr4 (165791641-165791761) | |
| 507-684, gnl|tetNig1|chr16 (8124614-8124741) | |
| 770-893, gnl|bosTau2|chr5 (59397890-59398013) | |
| 770-893, gnl|canFam2|chr27 (39562427-39562290) | |
| 770-893, gnl|canFam2|chr27 (39630652-39630581) | |
| 770-893, gnl|dasNov1|scaffold_10192 (44147-44076) | |
| 770-893, gnl|dasNov1|scaffold_15693 (86045-85911) | |
| 770-893, gnl|echTel1|scaffold_287013 (41240-41321) | |
| 770-893, gnl|echTel1|scaffold_315425 (67752-67615) | |
| 770-893, gnl|galGal2|chr1 (68237431-68237562) | |
| 770-893, gnl|galGal2|chr1 (68242038-68242121) | |
| 770-893, gnl|hg17|chr12 (9314232-9314369) | |
| 770-893, gnl|hg17|chr12 (9240868-9240939) | |
| 770-893, gnl|Hg17|chr12 (9314356-9314233) | |
| 770-893, gnl|loxAfr1|scaffold_6357 (36068-36205) | |
| 770-893, gnl|loxAfr1|scaffold_6357 (36062-36145) | |
| 770-893, gnl|mm7|chr6 (128542630-128542767) | |
| 770-893, gnl|Mm7|chr6 (128542754-128542631) | |
| 770-893, gnl|monDom2|scaffold_31 (11722540-11722406) | |
| 770-893, gnl|monDom2|scaffold_31 (11722546-11722466) | |
| 770-893, gnl|oryCun1|scaffold_187218 (41867-41811) | |
| 770-893, gnl|oryCun1|scaffold_85466 (698-565) | |
| 770-893, gnl|panTro1|chrUn_random (57778966-57778829) | |
| 770-893, gnl|panTro1|chrUn_random (57857875-57857804) | |
| 770-893, gnl|rheMac2|chr11 (9419715-9419852) | |
| 770-893, gnl|rheMac2|chr11 (9248886-9248966) | |
| 770-893, gnl|rn3|chr4 (165787364-165787501) | |
| 770-893, gnl|rn3|chr4 (158356921-158356847) |