Ss1.1-Liv1-LVRM1B040081.5
|
TTTCAGCCTACAAAGGAAAACAGAATCCACCCTACTTGGTCACCTGAGGGAGTCCTTCAG
CTGAGGAGCTGGACTTGCTTTTGTCACTCAGCAAAGAGGGTTAAAACTTAGCTGAAGAGC
TGTGAGCGGACCCTTTTTCAAGAGGGGCTTCTGAAACAAAATGCCAGGAGTGTAACATAA
TACAGAGGCCACAAACATGGAAAGGCTATGGCATCTTGGCAGGTAACATGAATGTCTGAA
GGGAGTCAGTTGCTCACAGGCAAGCATGTGTCCCACGGAGGAAATACTACTTCTAACTCC
CTTCCTGTGTCCCTCTCCTCCTACCTTGTTCCTTTTTTTCTCCCTCCCTCCCGCTTTCAT
CCTTTTTTTCCCCCTTCCCTTCTAGGAGAAGCCATAGATTTGGAATTTCATGTGAGGAAT
GCTTTGTTAGTGTTGAGCTAGTGGCATCTGGGCTGTCATCTGGCTCCTTTTTGTCCAGAT
TAGGAAATGGCACCCTTTCCTTCCTGCCAGCGCCCATGACTGTGCAAGTCAAGTGGGGGC
TGGATTTCACTGGCCCCGTGGCTGAGCCCTTGTGCCAGGCACAAGCTGCCCAACTTTAGA
CAGTGACCCCAAAGTTATATATGTTATGTGAGCCAAGCAAAACATTTCTGTGGGCCATGC
CTAGCCCACAGGCTAATCATTTTGCAGCCTCTAGGGTTGTGGTTGAAACAAAGCTCTGGG
GTCAGACTGTCTGGCTTCAAATCTGGGTTCTGTCATACAGAGAAATGATTCAGTATTTCT
CTGCCTCAGCCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTCAGCCTACAAAGGAAAACAGAATCCACCCTACTTGGTCACCTGAGGGAGTCCTTCAG
CTGAGGAGCTGGACTTGCTTTTGTCACTCAGCAAAGAGGGTTAAAACTTAGCTGAAGAGC
TGTGAGCGGACCCTTTTTCAAGAGGGGCTTCTGAAACAAAATGCCAGGAGTGTAACATAA
TACAGAGGCCACAAACATGGAAAGGCTATGGCATCTTGGCAGGTAACATGAATGTCTGAA
GGGAGTCAGTTGCTCACAGGCAAGCATGTGTCCCACGGAGGAAATACTACTTCTAACTCC
CTTCCTGTGTCCCTCTCCTCCTACCTTGTTCCTTTTTTTCTCCCTCCCTCCCGCTTTCAT
CCTTTTTTTCCCCCTTCCCTTCTAGGAGAAGCCATAGATTTGGAATTTCATGTGAGGAAT
GCTTTGTTAGTGTTGAGCTAGTGGCATCTGGGCTGTCATCTGGCTCCTTTTTGTCCAGAT
TAGGAAATGGCACCCTTTCCTTCCTGCCAGCGCCCATGACTGTGCAAGTCAAGTGGGGGC
TGGATTTCACTGGCCCCGTGGCTGAGCCCTTGTGCCAGGCACAAGCTGCCCAACTTTAGA
CAGTGACCCCAAAGTTATATATGTTATGTGAGCCAAGCAAAACATTTCTGTGGGCCATGC
CTAGCCCACAGGCTAATCATTTTGCAGCCTCTAGGGTTGTGGTTGAAACAAAGCTCTGGG
GTCAGACTGTCTGGCTTCAAATCTGGGTTCTGTCATACAGAGAAATGATTCAGTATTTCT
CTGCCTCAGCCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
625-717, - strand, RNAmicro p=0.971571 |
|
84-167, + strand, RNAmicro p=0.940623 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
625-717, - strand, RNAmicro p=0.971571 |
|
84-167, + strand, RNAmicro p=0.940623 |
|
80-169, CJ002429 full-length enriched swine cDNA library, adult liver Sus
(dbj|CJ002429.1|), blast E-value=1.99965e-42, identity=100% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
80-169, CJ002429 full-length enriched swine cDNA library, adult liver Sus
(dbj|CJ002429.1|), blast E-value=1.99965e-42, identity=100% |
|
1-217, gnl|bosTau2|chr20 (18593102-18592889) |
|
1-217, gnl|canFam2|chr4 (70423468-70423190) |
|
1-217, gnl|hg17|chr5 (42535450-42535732) |
|
1-217, gnl|Hg17|chr5 (42535487-42535731) |
|
1-217, gnl|mm7|chr15 (3336532-3336256) |
|
1-217, gnl|Mm7|chr15 (3336490-3336289) |
|
1-217, gnl|oryCun1|scaffold_197626 (203-479) |
|
1-217, gnl|panTro1|chr4 (73992275-73991998) |
|
1-217, gnl|rheMac2|chr6 (42393059-42393336) |
|
1-217, gnl|rn3|chr2 (52623215-52622945) |
| |
|
275-792, gnl|bosTau2|chr20 (18592274-18591770) |
|
275-792, gnl|Hg17|chr5 (42535812-42536281) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-217, gnl|bosTau2|chr20 (18593102-18592889) |
|
1-217, gnl|canFam2|chr4 (70423468-70423190) |
|
1-217, gnl|hg17|chr5 (42535450-42535732) |
|
1-217, gnl|Hg17|chr5 (42535487-42535731) |
|
1-217, gnl|mm7|chr15 (3336532-3336256) |
|
1-217, gnl|Mm7|chr15 (3336490-3336289) |
|
1-217, gnl|oryCun1|scaffold_197626 (203-479) |
|
1-217, gnl|panTro1|chr4 (73992275-73991998) |
|
1-217, gnl|rheMac2|chr6 (42393059-42393336) |
|
1-217, gnl|rn3|chr2 (52623215-52622945) |
| |
|
275-792, gnl|bosTau2|chr20 (18592274-18591770) |
|
275-792, gnl|Hg17|chr5 (42535812-42536281) |
