Non-Coding RNA Search

Ss1.1-Liv1-LVRM1D030085.5

Sequence:


               
               CTGTAAATGAGGACAATGACCTGCACATCGTAGATTTGTTGAAGGATTAAATACGTTAAG
GCCAGTGGAAGCACTGAGTGCATGTTTGGCACGTCACCAGTCCTCAGGACATTTAGTTGT
GATTGTGTTCATTCTTTATCAGGGCAGCTGGGCTCCAAAGGCCAGATGTACAGAGCATGG
GCACTAAACATCACTTTGAGCTGCATTTTATTGAGCATGAGTCGACCTCATCTTATGTTT
TCCTTGGACACTGCTTTTTAGTCACTGCAGTATAATCCCAGTTCAGGCTCAAATAAATCA
TTTTCACGGACTTCCCAAGTGTATCGCCTGGTTATCTCCTCCTCGGAGGTTCTAGCCGGG
ACAGAGTCCTGCTGCTTGCTTCCACTTCAGGTTGGAGGGACATCCTAAAGGGACGTCCCC
CTGCGTTCCACTGGATTTCCAAGGGAAGCCTGGGAGACCATCAGAGCTGCCTTATCCAAC
CTGGCCTGCATCCCAAATTGGGGGTTTTATGGTCTATGAAACCAAGACATGTTGATTTAA
GAAAACCAGACATCCAGCCTGAAAAGGTCAGCTGTGTCTCTGGGTGCAGGCCTGCCAATT
ACACACAAAGTGCAGAACTGAGCCCCCCAAAGTCTTTGGGGGATCAGCATACTCATATGC
TTTTCCAATCTGGAGAAGCTGAGTCATCTGATTGCCACAGAGGTTACTCACTGTATTTGG
CACTCACTCTTGGGTTTCCACAACTCTGGACGGCCCGCTGAGCGCCTCCTTCCCTCCCCC
TGGATTCTGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTAAATGAGGACAATGACCTGCACATCGTAGATTTGTTGAAGGATTAAATACGTTAAG
GCCAGTGGAAGCACTGAGTGCATGTTTGGCACGTCACCAGTCCTCAGGACATTTAGTTGT
GATTGTGTTCATTCTTTATCAGGGCAGCTGGGCTCCAAAGGCCAGATGTACAGAGCATGG
GCACTAAACATCACTTTGAGCTGCATTTTATTGAGCATGAGTCGACCTCATCTTATGTTT
TCCTTGGACACTGCTTTTTAGTCACTGCAGTATAATCCCAGTTCAGGCTCAAATAAATCA
TTTTCACGGACTTCCCAAGTGTATCGCCTGGTTATCTCCTCCTCGGAGGTTCTAGCCGGG
ACAGAGTCCTGCTGCTTGCTTCCACTTCAGGTTGGAGGGACATCCTAAAGGGACGTCCCC
CTGCGTTCCACTGGATTTCCAAGGGAAGCCTGGGAGACCATCAGAGCTGCCTTATCCAAC
CTGGCCTGCATCCCAAATTGGGGGTTTTATGGTCTATGAAACCAAGACATGTTGATTTAA
GAAAACCAGACATCCAGCCTGAAAAGGTCAGCTGTGTCTCTGGGTGCAGGCCTGCCAATT
ACACACAAAGTGCAGAACTGAGCCCCCCAAAGTCTTTGGGGGATCAGCATACTCATATGC
TTTTCCAATCTGGAGAAGCTGAGTCATCTGATTGCCACAGAGGTTACTCACTGTATTTGG
CACTCACTCTTGGGTTTCCACAACTCTGGACGGCCCGCTGAGCGCCTCCTTCCCTCCCCC
TGGATTCTGTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               629-774, + strand, RNAz p=0.986527

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               629-774, + strand, RNAz p=0.986527

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               181-792, gnl|bosTau2|chr1 (96485781-96485152)
               

               
               181-792, gnl|Hg17|chr21 (36766063-36765439)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               181-792, gnl|bosTau2|chr1 (96485781-96485152)
               

               
               181-792, gnl|Hg17|chr21 (36766063-36765439)

	181-792, gnl\|bosTau2\|chr1 (96485781-96485152)
	181-792, gnl\|Hg17\|chr21 (36766063-36765439)