Non-Coding RNA Search

Ss1.1-Liv1-LVRM1E010169.5

Sequence:


               
               TGTGAAATTTGAAATACTGTGTCCTGTGTAAGGCTCTGGATCCTCGTAGAATCAGTTATT
CTGCTTGATCCTGGACTAGCGATGGGAGTGGAGTCAAATGTTATTGGTAATCTCAGAGCA
AAATGTTTGACCTCTGAATTTTCTCTCGTCTTAATTTCTAAGAAAGAACCACAGGCTGAT
GTCTGGGAGTCCATTTTTCCACCTTCCTCCTTATCCTTGGTTGGTTTGAGGAACAAAGTA
AAATGTAACTAGACCCCAAGTTGAAACTCATGGTTGAAACTGACCTGATATGCTGGGCAA
CCTTGTCTTAGCCCCATGCAGACTCTTCCATTCACATGGTATTGGTTGAATACTCCTCAG
TCTTAACATGAGGGGGAAGTTTAAAAAAAAAAAAAATGTAGAAGAAGCAAAATCAGTTCT
ACTTCATTCCTTGATTTTTTGAGGCTTCATGGCTGGTAGTTCCCTTTACTCCAAGCACCC
CTTCCCCTTTTCCTGTTACAAAATGAAAGTGACCTGATTCAGACCAGCGAAGCCTAAGGC
CTAGCGTCCATGGATCAGACCAAATGAATTCTCTGACTTGGCTTTTTGTTGTTTGTTTTA
CTTGCTGTTATCAGGGAACCAAGAATTTTATTATTTGCTGTTATCAGGGAATCAGGAACT
TTAATGAACTACTATCTGGTCCTGAATTTTTAGTGACTAGACATAACAGTTGGAAACCTT
ACTTAATCATTACTAAGTTCAAGGTTGAAAGTACAACCACATTTATCTTTCTGACCTTAT
GCAATTCTTGAGGAACTATAAATTCTGGGATTTAATCAGGCAATAAAATGCCCCCGCTTC
TCTCTTTATTTCTTCCCTAAATGGAACAAAGCCATCATTGACCAGGCTGTTGTGAGGGAT
AAGATGCTAATAACAGCCTTACTTCCCAAGACAGGAGTGGGAGTCACACTAACTAACTTG
GGTATAGATGCTATTGGAAGAGTCAGGTTGCACATGACTCTATGTAGTATAACACCAAAA
AGTTTAAGAAGTGAGAGTTCAACACAGTTTGAACCCCTGTTATTGTCAGGGATGCCCAGG
GAATAAGACAGGTCCAATCCCAGTCTTCATGAACTAGTTTAGACTAGTAAGGGGTTTCTC
AGTGGTGCACCTCTGTCCTTTAGGCCAAGATAATTCTCAGATGTACAGAACTATCCTACT
TATTGTTGTCCCTTGCCTAGTAAATATCTGTAGGGCCCTCTAAGTTATTGTGACAATTAA
AACCTGCCTCCACACATTTCCAAATTCCCCTCTAGGGGGAGGGGAGAGGCTTTGTCCCTT
ATTGAGAACCAGTGGTTTAGTGGGAAGTGCAACTTTAAAAATTCACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGAAATTTGAAATACTGTGTCCTGTGTAAGGCTCTGGATCCTCGTAGAATCAGTTATT
CTGCTTGATCCTGGACTAGCGATGGGAGTGGAGTCAAATGTTATTGGTAATCTCAGAGCA
AAATGTTTGACCTCTGAATTTTCTCTCGTCTTAATTTCTAAGAAAGAACCACAGGCTGAT
GTCTGGGAGTCCATTTTTCCACCTTCCTCCTTATCCTTGGTTGGTTTGAGGAACAAAGTA
AAATGTAACTAGACCCCAAGTTGAAACTCATGGTTGAAACTGACCTGATATGCTGGGCAA
CCTTGTCTTAGCCCCATGCAGACTCTTCCATTCACATGGTATTGGTTGAATACTCCTCAG
TCTTAACATGAGGGGGAAGTTTAAAAAAAAAAAAAATGTAGAAGAAGCAAAATCAGTTCT
ACTTCATTCCTTGATTTTTTGAGGCTTCATGGCTGGTAGTTCCCTTTACTCCAAGCACCC
CTTCCCCTTTTCCTGTTACAAAATGAAAGTGACCTGATTCAGACCAGCGAAGCCTAAGGC
CTAGCGTCCATGGATCAGACCAAATGAATTCTCTGACTTGGCTTTTTGTTGTTTGTTTTA
CTTGCTGTTATCAGGGAACCAAGAATTTTATTATTTGCTGTTATCAGGGAATCAGGAACT
TTAATGAACTACTATCTGGTCCTGAATTTTTAGTGACTAGACATAACAGTTGGAAACCTT
ACTTAATCATTACTAAGTTCAAGGTTGAAAGTACAACCACATTTATCTTTCTGACCTTAT
GCAATTCTTGAGGAACTATAAATTCTGGGATTTAATCAGGCAATAAAATGCCCCCGCTTC
TCTCTTTATTTCTTCCCTAAATGGAACAAAGCCATCATTGACCAGGCTGTTGTGAGGGAT
AAGATGCTAATAACAGCCTTACTTCCCAAGACAGGAGTGGGAGTCACACTAACTAACTTG
GGTATAGATGCTATTGGAAGAGTCAGGTTGCACATGACTCTATGTAGTATAACACCAAAA
AGTTTAAGAAGTGAGAGTTCAACACAGTTTGAACCCCTGTTATTGTCAGGGATGCCCAGG
GAATAAGACAGGTCCAATCCCAGTCTTCATGAACTAGTTTAGACTAGTAAGGGGTTTCTC
AGTGGTGCACCTCTGTCCTTTAGGCCAAGATAATTCTCAGATGTACAGAACTATCCTACT
TATTGTTGTCCCTTGCCTAGTAAATATCTGTAGGGCCCTCTAAGTTATTGTGACAATTAA
AACCTGCCTCCACACATTTCCAAATTCCCCTCTAGGGGGAGGGGAGAGGCTTTGTCCCTT
ATTGAGAACCAGTGGTTTAGTGGGAAGTGCAACTTTAAAAATTCACTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               295-413, + strand, RNAz p=0.933476

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               295-413, + strand, RNAz p=0.933476

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               64-538, gnl|bosTau2|chr3 (8277556-8277100)
               

               
               64-538, gnl|Hg17|chr1 (150948238-150947678)
               


               
               626-1368, gnl|bosTau2|chr3 (8277021-8276279)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-538, gnl|bosTau2|chr3 (8277556-8277100)
               

               
               64-538, gnl|Hg17|chr1 (150948238-150947678)
               


               
               626-1368, gnl|bosTau2|chr3 (8277021-8276279)

	64-538, gnl\|bosTau2\|chr3 (8277556-8277100)
	64-538, gnl\|Hg17\|chr1 (150948238-150947678)

	626-1368, gnl\|bosTau2\|chr3 (8277021-8276279)