Non-Coding RNA Search

Ss1.1-Liv1-LVRM1E090003.5

Sequence:


               
               ACTCTATCAACGCCGTGTGGAGGGAGTGAGGCCTAGCAGCAGAAGGCATGCACATGGAGG
GTGAACAGCTGGGGTCCCTGGTAAGCAGGGCACCTGGCCTGAGCTACGAAAAGTCCCAGG
ACATGGAGGATGGTGCCTTTCACCCCCAATCAGCCACCAAAACATCAGGAGAGATGGACA
AGCCATTGATCAGCCACCACCTGATGGATAGCGATGGCAACCTTGCCGAGGTCCCCAGTG
AGGTTCCCAAAGTGGGCATCCTGGGTAGTGGGGACTTTGCCCGCTCCCTGGCCACACGCC
TGGTGGGCTCTGGCTTCAGTGTGGTGGTGGGGAGCCGCAACCCCAAACGCACAGCCGGGC
TGTTCCCCTCAGCAGCACGAGTGACTTTCCAGGAGGAGGCGGTGGGCTCCCCGGAGGTCA
TCTTCGTGGCTATGTTCCGGGAACACTACTCCACACTATGTAGTCTCAGTGACCAGCTGG
CTGGCAAGATCTTGGTGGATGTGAGCAACCCCACAGAGCAGGAGCACCTCCAGCACCGTG
AGTCCAATGCTGAGTACCTGGCCTCCCTCTTCCCCACCTGCCCAGTAGTCAAGGCCTTCA
ACGTCATCTCTGCCTGGACCCTGCAGTCTGGCCCAAGGGATGGGAATCGACAGGTGCCTG
TCTGCAGTGACCAGCCGGAAGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCTATCAACGCCGTGTGGAGGGAGTGAGGCCTAGCAGCAGAAGGCATGCACATGGAGG
GTGAACAGCTGGGGTCCCTGGTAAGCAGGGCACCTGGCCTGAGCTACGAAAAGTCCCAGG
ACATGGAGGATGGTGCCTTTCACCCCCAATCAGCCACCAAAACATCAGGAGAGATGGACA
AGCCATTGATCAGCCACCACCTGATGGATAGCGATGGCAACCTTGCCGAGGTCCCCAGTG
AGGTTCCCAAAGTGGGCATCCTGGGTAGTGGGGACTTTGCCCGCTCCCTGGCCACACGCC
TGGTGGGCTCTGGCTTCAGTGTGGTGGTGGGGAGCCGCAACCCCAAACGCACAGCCGGGC
TGTTCCCCTCAGCAGCACGAGTGACTTTCCAGGAGGAGGCGGTGGGCTCCCCGGAGGTCA
TCTTCGTGGCTATGTTCCGGGAACACTACTCCACACTATGTAGTCTCAGTGACCAGCTGG
CTGGCAAGATCTTGGTGGATGTGAGCAACCCCACAGAGCAGGAGCACCTCCAGCACCGTG
AGTCCAATGCTGAGTACCTGGCCTCCCTCTTCCCCACCTGCCCAGTAGTCAAGGCCTTCA
ACGTCATCTCTGCCTGGACCCTGCAGTCTGGCCCAAGGGATGGGAATCGACAGGTGCCTG
TCTGCAGTGACCAGCCGGAAGCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34534831|dbj|BAC87126.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34534831|dbj|BAC87126.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               152-270, - strand, RNAz p=0.693213

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-270, - strand, RNAz p=0.693213

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               152-655, gnl|bosTau2|chr2 (44648587-44648084)
               

               
               152-655, gnl|Hg17|chr2 (119719293-119719796)
               

               
               152-655, gnl|Mm7|chr1 (120111763-120111260)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               152-655, gnl|bosTau2|chr2 (44648587-44648084)
               

               
               152-655, gnl|Hg17|chr2 (119719293-119719796)
               

               
               152-655, gnl|Mm7|chr1 (120111763-120111260)

	152-655, gnl\|bosTau2\|chr2 (44648587-44648084)
	152-655, gnl\|Hg17\|chr2 (119719293-119719796)
	152-655, gnl\|Mm7\|chr1 (120111763-120111260)