Non-Coding RNA Search

Ss1.1-Liv1-LVRM1F090172.5

Sequence:


               
               TAACATATCTGATAAACCTGGTTTAGTGGTGCTGAACTCTAAGCTGCTGCTTGCTTATCT
GTTAAATTCTAGCTCTCCTTCAAATCAGAGTATCTTTTCATCAATGTGAGGAATGGATGC
AGTTTGAAGAAAATCACAATGTTGGGACTTTATAGACTTCTGGTTTTGATGTCAGGTCCT
TGTTCCCCAAACGGTATTCTAGCTTGCATGGGTGTTGCATTGACTTTAATTTATTGAAAA
ATACAATTTTTTGTAAGTATCAGATCAGTCGTACTGGTGTTAGTGTTGTAATCAGATTAA
ACCCACTTCCATTAAACTTGACAGGACTATAGAAGGACAATATTTTTTAGTTCATGAATT
CTACTTTTCAAGTATATGAAAGCTGCAGGTGGGATAAAAATCTCATACATGGGTTTTTAG
CCTCCACTGTCATGTGTACTTTTGTACTTAACCTTGTACAGTTATTTTCATCTCTTGAAA
CATGAAAGAAATGTTAATATAGATGTTCTTTAGCAGATCTGGACATTTGGTACATAATCC
AGCACAAATAAACTGGGTGGTGATAATAAAAATGATTTTCTCAAAAAAAAAAAAAAAAGA
AGAAGAATATCTTTGCTGGAGAGTATTCTTGGTTGTAGGCTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAACATATCTGATAAACCTGGTTTAGTGGTGCTGAACTCTAAGCTGCTGCTTGCTTATCT
GTTAAATTCTAGCTCTCCTTCAAATCAGAGTATCTTTTCATCAATGTGAGGAATGGATGC
AGTTTGAAGAAAATCACAATGTTGGGACTTTATAGACTTCTGGTTTTGATGTCAGGTCCT
TGTTCCCCAAACGGTATTCTAGCTTGCATGGGTGTTGCATTGACTTTAATTTATTGAAAA
ATACAATTTTTTGTAAGTATCAGATCAGTCGTACTGGTGTTAGTGTTGTAATCAGATTAA
ACCCACTTCCATTAAACTTGACAGGACTATAGAAGGACAATATTTTTTAGTTCATGAATT
CTACTTTTCAAGTATATGAAAGCTGCAGGTGGGATAAAAATCTCATACATGGGTTTTTAG
CCTCCACTGTCATGTGTACTTTTGTACTTAACCTTGTACAGTTATTTTCATCTCTTGAAA
CATGAAAGAAATGTTAATATAGATGTTCTTTAGCAGATCTGGACATTTGGTACATAATCC
AGCACAAATAAACTGGGTGGTGATAATAAAAATGATTTTCTCAAAAAAAAAAAAAAAAGA
AGAAGAATATCTTTGCTGGAGAGTATTCTTGGTTGTAGGCTTTTTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               442-559, + strand, RNAz p=0.624701

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               442-559, + strand, RNAz p=0.624701

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of CR623961, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of CR623961, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               98-584, gnl|bosTau2|chr17 (27887674-27888168)
               

               
               98-584, gnl|Hg17|chr12 (121514983-121514484)
               

               
               98-584, gnl|Mm7|chr5 (122975050-122974566)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-584, gnl|bosTau2|chr17 (27887674-27888168)
               

               
               98-584, gnl|Hg17|chr12 (121514983-121514484)
               

               
               98-584, gnl|Mm7|chr5 (122975050-122974566)

	98-584, gnl\|bosTau2\|chr17 (27887674-27888168)
	98-584, gnl\|Hg17\|chr12 (121514983-121514484)
	98-584, gnl\|Mm7\|chr5 (122975050-122974566)