Non-Coding RNA Search

Ss1.1-Liv1-LVRM1F100091.5

Sequence:


               
               TGTAAATACCCAGGGTGCTTGTCTCAGCAGATTTCACCTGACTCTCCAAGCAACATGAAG
CCCAAAAAATACCAAGGTCCCCCTTGCGGGAAGATGCTTCGCAGGGATTCCTTCTGGCTT
GTGTTGGTTAAGTGTATGGAGATGCCAGGCTTCTGAGTGTCAGAAGTAAGCCATAATTAT
ATAGGTACTGGCAGGGATTTTACAAGAGGAAGGGACAGCCTTGGAGAGAGGTTTTCCTTT
TTTTAGTTCCTGGGAAAATGACTCTCAGCAGGTTTGTTCCATCAAGTGTTCTCGCCACAT
ACTTTGCACCGTAATGACTTACAAATTGCATGCTAATTTTGCCACAGTCAAATCATCCCA
GGCTTTATCCTGGAAAGAGAAAGATGGGCTCCTTGTAATGAAACAGTATCCACAGGACTT
GATGTCTGAAACAGACTGTGACTATTTCCTTAGTATTTGAAACTCATTTAAAGATTTGCA
CAAAGAGGGTAAAGCTCCGGAATGAACGTGTGGGAAACGTGCTCATGAAGCACTGGAAGG
TGTGGTGACAGAAGACGTGTGAGACTGCCATCTATTCTTCTGCTAACTGCGTTGGAAGCT
CCGGGGCAAGCTTAAAAAAGGGGGAATCCTGCTGAGAGTTCCTCTCAGCTGTTCTTTAAA
CAGTGGTTCTCAAACTTCTCAGCCCGCGAATTTGGCAGAACACAGCTTACAGCCAGTCGA
AGCCAGAGAATGGGGGCGGGGGGCGGTGCTGGANTGTTTCCCTCTCTCCTGCCTGTCTGC
CCGCCCCTTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTAAATACCCAGGGTGCTTGTCTCAGCAGATTTCACCTGACTCTCCAAGCAACATGAAG
CCCAAAAAATACCAAGGTCCCCCTTGCGGGAAGATGCTTCGCAGGGATTCCTTCTGGCTT
GTGTTGGTTAAGTGTATGGAGATGCCAGGCTTCTGAGTGTCAGAAGTAAGCCATAATTAT
ATAGGTACTGGCAGGGATTTTACAAGAGGAAGGGACAGCCTTGGAGAGAGGTTTTCCTTT
TTTTAGTTCCTGGGAAAATGACTCTCAGCAGGTTTGTTCCATCAAGTGTTCTCGCCACAT
ACTTTGCACCGTAATGACTTACAAATTGCATGCTAATTTTGCCACAGTCAAATCATCCCA
GGCTTTATCCTGGAAAGAGAAAGATGGGCTCCTTGTAATGAAACAGTATCCACAGGACTT
GATGTCTGAAACAGACTGTGACTATTTCCTTAGTATTTGAAACTCATTTAAAGATTTGCA
CAAAGAGGGTAAAGCTCCGGAATGAACGTGTGGGAAACGTGCTCATGAAGCACTGGAAGG
TGTGGTGACAGAAGACGTGTGAGACTGCCATCTATTCTTCTGCTAACTGCGTTGGAAGCT
CCGGGGCAAGCTTAAAAAAGGGGGAATCCTGCTGAGAGTTCCTCTCAGCTGTTCTTTAAA
CAGTGGTTCTCAAACTTCTCAGCCCGCGAATTTGGCAGAACACAGCTTACAGCCAGTCGA
AGCCAGAGAATGGGGGCGGGGGGCGGTGCTGGANTGTTTCCCTCTCTCCTGCCTGTCTGC
CCGCCCCTTTCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               152-269, - strand, RNAz p=0.955089
               

               
               585-731, - strand, RNAz p=0.943478

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-269, - strand, RNAz p=0.955089
               

               
               585-731, - strand, RNAz p=0.943478

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               200-303, + strand, RNAmicro p=0.986257

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               200-303, + strand, RNAmicro p=0.986257

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-772, gnl|bosTau2|chr13 (48884659-48883872)
               

               
               1-772, gnl|Hg17|chr20 (35909294-35910050)
               

               
               1-772, gnl|Mm7|chr2 (157616186-157616853)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-772, gnl|bosTau2|chr13 (48884659-48883872)
               

               
               1-772, gnl|Hg17|chr20 (35909294-35910050)
               

               
               1-772, gnl|Mm7|chr2 (157616186-157616853)

	152-269, - strand, RNAz p=0.955089
	585-731, - strand, RNAz p=0.943478

	1-772, gnl\|bosTau2\|chr13 (48884659-48883872)
	1-772, gnl\|Hg17\|chr20 (35909294-35910050)
	1-772, gnl\|Mm7\|chr2 (157616186-157616853)