Non-Coding RNA Search

Ss1.1-Liv1-LVRM1F110039.5

Sequence:


               
               TTTCATTATGGCTGATCTGTTTCTTTCTCTAGATGCTGGGGCGTCTGAACAATTATCTCT
GAAGCTACCCCCAAATGTGGTAGAAGACTCTGCTCGTGCCTTCTTCTCAGTTTTGGGTGA
GTCTGCAGCCCTCATGGACTATCACACTATGTTGACCAGGTCTACTACATTTTTTTCCAT
ATATACTTTCTCAAAATAACAACTATAATTTTAGCTTCTTTCTTCTCTTCTTTTTTGGAC
TGGTTTAGTGCTTCCCATCATACTTCTGTCTCTAGAAGACTCACCCTTCTTAAAAATATT
CATGTCCTTACCTAGGTTAATTATTCACTTCTTAATGATCCTGGTGGGTTACAATCTGTA
AGCTTTTATGACTTCCCATCTTTCTCATTTCCTAGGAGACTTACTAGGCTCTGCCATGAG
AAACACACAAAACCTCCTCCAGATGCCCTACGGCTGTGGAGAACAGAATATGGTCCTCTT
TGCTCCTAACATCTATGTTCTGGATTACCTGAATGAAACACAGCAGCTGACTGCAGAGAT
CAAGTCCAAGGCCATTCGCTACCTCAACACCGGTGAGTATTGAATAAGTGAGTGAAAACT
TCACAGTGCTGTTTTCACCATAGAAGGGATTTCCCCATAGGCTTGAGTTACTTGTCGATT
CCATGATATGTAAATGTCTCATTCTATGATGGTCACAAGAATGAGGATACTATGACCGTT
AATTTCATGTGACCTATCCAGTGTCCAACCTCCAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCATTATGGCTGATCTGTTTCTTTCTCTAGATGCTGGGGCGTCTGAACAATTATCTCT
GAAGCTACCCCCAAATGTGGTAGAAGACTCTGCTCGTGCCTTCTTCTCAGTTTTGGGTGA
GTCTGCAGCCCTCATGGACTATCACACTATGTTGACCAGGTCTACTACATTTTTTTCCAT
ATATACTTTCTCAAAATAACAACTATAATTTTAGCTTCTTTCTTCTCTTCTTTTTTGGAC
TGGTTTAGTGCTTCCCATCATACTTCTGTCTCTAGAAGACTCACCCTTCTTAAAAATATT
CATGTCCTTACCTAGGTTAATTATTCACTTCTTAATGATCCTGGTGGGTTACAATCTGTA
AGCTTTTATGACTTCCCATCTTTCTCATTTCCTAGGAGACTTACTAGGCTCTGCCATGAG
AAACACACAAAACCTCCTCCAGATGCCCTACGGCTGTGGAGAACAGAATATGGTCCTCTT
TGCTCCTAACATCTATGTTCTGGATTACCTGAATGAAACACAGCAGCTGACTGCAGAGAT
CAAGTCCAAGGCCATTCGCTACCTCAACACCGGTGAGTATTGAATAAGTGAGTGAAAACT
TCACAGTGCTGTTTTCACCATAGAAGGGATTTCCCCATAGGCTTGAGTTACTTGTCGATT
CCATGATATGTAAATGTCTCATTCTATGATGGTCACAAGAATGAGGATACTATGACCGTT
AATTTCATGTGACCTATCCAGTGTCCAACCTCCAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|619270|gb|AAB32214.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|619270|gb|AAB32214.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               59-170, - strand, RNAz p=0.515581
               

               
               326-482, - strand, RNAz p=0.865447

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               59-170, - strand, RNAz p=0.515581
               

               
               326-482, - strand, RNAz p=0.865447

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-755, gnl|bosTau2|chr5 (61078059-61078818)
               

               
               1-755, gnl|Hg17|chr12 (9124071-9123341)
               

               
               1-755, gnl|Mm7|chr6 (121693341-121694642)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-755, gnl|bosTau2|chr5 (61078059-61078818)
               

               
               1-755, gnl|Hg17|chr12 (9124071-9123341)
               

               
               1-755, gnl|Mm7|chr6 (121693341-121694642)

	59-170, - strand, RNAz p=0.515581
	326-482, - strand, RNAz p=0.865447

	1-755, gnl\|bosTau2\|chr5 (61078059-61078818)
	1-755, gnl\|Hg17\|chr12 (9124071-9123341)
	1-755, gnl\|Mm7\|chr6 (121693341-121694642)