Non-Coding RNA Search

Ss1.1-Liv1-LVRM1G050179.5

Sequence:


               
               ATGAAGAAAGGGTTTTCTTAGAAGATCCTTTTGCATGCAGAATGGATAACTCTGCCTTTT
GAAACAAGGACAAACAGGCTCTGGTCTCTCCAAGTACATTATAGAAGAATGATCGAGGTG
AGGAAAAGGAGCACAGAGCTTTGCTTAATGGTGAAAAATGCTGACCATCTTTGTTCAGTT
ATTCCTCATTCCACATGATCCTGCTTTCTGCCCTTCACAATATACTGTGTGACTGTGGAG
ACAGGTAAAAAGGCTCCTCTTTCTTTTCCTTTTCCCTTACCTTTCTTGCTTCCCTTCTTT
TTTTTTTTTTTTTTTTTTTCGGTTCTTTTCTTCAGTTAAAAATGTTTGTTCTCCTCCCCT
GCCTTTCCTTGAGATGTCCAGGGGCAGTGGAGCCTAAGAGACTGGGATCAAGAAGGCAGC
TGGAGATCAGGAGATAAATTATATACAGGGGAAGGGAGTAAAGAAATAAAAATATTGAGA
ATATTGGGATCCACCTCTCAGAGAGAAGGAAGTTGTAAAAATGAGGAGGAAAAAAACTAG
GAGATTTGCGGTAGTGTTCAATTGGAATTGGAGGAATCAGTGTGAACTCATAGTTGGGGA
GCAGGTTGGGGAGATGGATATAGATATATGTTATTATGGAGATCTGTAGCTATATCTAGA
GTTAGATCTAGATCTAGATATCTGTCTGTTGAAAGATCCTAGTATCAATATCTCTCCAAA
GCAGTTACCACCCCTAGCACCCACATTTTGGTTCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGAAGAAAGGGTTTTCTTAGAAGATCCTTTTGCATGCAGAATGGATAACTCTGCCTTTT
GAAACAAGGACAAACAGGCTCTGGTCTCTCCAAGTACATTATAGAAGAATGATCGAGGTG
AGGAAAAGGAGCACAGAGCTTTGCTTAATGGTGAAAAATGCTGACCATCTTTGTTCAGTT
ATTCCTCATTCCACATGATCCTGCTTTCTGCCCTTCACAATATACTGTGTGACTGTGGAG
ACAGGTAAAAAGGCTCCTCTTTCTTTTCCTTTTCCCTTACCTTTCTTGCTTCCCTTCTTT
TTTTTTTTTTTTTTTTTTTCGGTTCTTTTCTTCAGTTAAAAATGTTTGTTCTCCTCCCCT
GCCTTTCCTTGAGATGTCCAGGGGCAGTGGAGCCTAAGAGACTGGGATCAAGAAGGCAGC
TGGAGATCAGGAGATAAATTATATACAGGGGAAGGGAGTAAAGAAATAAAAATATTGAGA
ATATTGGGATCCACCTCTCAGAGAGAAGGAAGTTGTAAAAATGAGGAGGAAAAAAACTAG
GAGATTTGCGGTAGTGTTCAATTGGAATTGGAGGAATCAGTGTGAACTCATAGTTGGGGA
GCAGGTTGGGGAGATGGATATAGATATATGTTATTATGGAGATCTGTAGCTATATCTAGA
GTTAGATCTAGATCTAGATATCTGTCTGTTGAAAGATCCTAGTATCAATATCTCTCCAAA
GCAGTTACCACCCCTAGCACCCACATTTTGGTTCGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               358-476, - strand, RNAz p=0.837973

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               358-476, - strand, RNAz p=0.837973

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-600, gnl|bosTau2|chr1 (88685499-88684916)
               

               
               1-600, gnl|Hg17|chr3 (134935119-134935691)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr1 (88685499-88684916)
               

               
               1-600, gnl|Hg17|chr3 (134935119-134935691)

	1-600, gnl\|bosTau2\|chr1 (88685499-88684916)
	1-600, gnl\|Hg17\|chr3 (134935119-134935691)