Non-Coding RNA Search

Ss1.1-Liv1-LVRM1G060198.5

Sequence:


               
               GCGTGACGAAGGAAGCGCGTGACGAAGGAGCTGTTGGCCGACGCCGGAGGGCAGTCGGTG
TAAACAAGGCCTTGCGCCGCTGCGGGTCCTGAGACCTCTCCTGGCTGGTGGGTAGTCTCT
CGCAGGCCTACCCCCCTTAGCTTACACATCCCTGGCACACCACGTGGGCGTGAGGCGAGG
AAGGAGGGGGTTAAGTGGAGTTTTAACTTCATTGGTTGTCGCTGCCGCCGGCTTTTGGGA
GGGAGTGTGCTGATTGGCCGGTAAGGGGGGCGTCGGGGGGTCCTAAGGCTTCTGATTGGT
TAGATGGGATAAGCTAATGAGGCGCTTTCTTCTGCGAGGGTTTTTGATTGGTCGGCCTGA
GAGGTTACCTGGGAATCCACCCCACCCTCAGGGACTTTGATAGGTGAGTTTGAGGTAGAA
AACTGAGAAATTCCTCTTCAAAGGATTCTTACTGGTGAGCTAAGGTCACGCCCTAGACTT
CACTCTGTTTTTTTTTGCTTCACAGGATTGGGAAAGGTTTGTGTTCCCGAAGCTTTGGGA
GTTGTTACAGGCCAAGGAGAAGGGTTCTCAGTCCCTAAGAAGTGTAGCCTTCCTAGTTAT
AGCTACCGCCGTACCTCAGGAGACCCTGGTATTTCTAGAGCAGGGTTTGCTTTCATCAAA
CCCAAGGAGGTGACAGGAGGAGTCCCTGCACAGGACTTAAGGATGCTGTGACCAGAAGAT
GGGATCACGGAACAGCAGCAGTGCAGGAACTGGGTCCGGAGACCCCTCCGAGGGCTTGCC
CCGAAGAGGGGCTGGCCTGCGTCGGAGTGAGGAAGAGGAAGAGGAGGATGAAGATGTGGA
TCTGGCCCAGGTACTGGCCTATCTCCTACGCAGAGGCCAAGTGAGGTTGGTGCAGGGAGG
AGGTGCGGCAAATTTACAACTCATCCAGGCCCTCTCAGACTCAGAGGAAGAGCATGACAA
TGCCTGGGATGGTCGTCTCGGAGACCGATACAACCCACCTGTGGATGCCACCCCTGACAC
CCGGGACCTGGAATGCAGTGAGATCAAGACACAGGTGGAATTGGCCACAGGGCGGCTAGG
ACATAGACGGGCAGCCCGGGAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTGACGAAGGAAGCGCGTGACGAAGGAGCTGTTGGCCGACGCCGGAGGGCAGTCGGTG
TAAACAAGGCCTTGCGCCGCTGCGGGTCCTGAGACCTCTCCTGGCTGGTGGGTAGTCTCT
CGCAGGCCTACCCCCCTTAGCTTACACATCCCTGGCACACCACGTGGGCGTGAGGCGAGG
AAGGAGGGGGTTAAGTGGAGTTTTAACTTCATTGGTTGTCGCTGCCGCCGGCTTTTGGGA
GGGAGTGTGCTGATTGGCCGGTAAGGGGGGCGTCGGGGGGTCCTAAGGCTTCTGATTGGT
TAGATGGGATAAGCTAATGAGGCGCTTTCTTCTGCGAGGGTTTTTGATTGGTCGGCCTGA
GAGGTTACCTGGGAATCCACCCCACCCTCAGGGACTTTGATAGGTGAGTTTGAGGTAGAA
AACTGAGAAATTCCTCTTCAAAGGATTCTTACTGGTGAGCTAAGGTCACGCCCTAGACTT
CACTCTGTTTTTTTTTGCTTCACAGGATTGGGAAAGGTTTGTGTTCCCGAAGCTTTGGGA
GTTGTTACAGGCCAAGGAGAAGGGTTCTCAGTCCCTAAGAAGTGTAGCCTTCCTAGTTAT
AGCTACCGCCGTACCTCAGGAGACCCTGGTATTTCTAGAGCAGGGTTTGCTTTCATCAAA
CCCAAGGAGGTGACAGGAGGAGTCCCTGCACAGGACTTAAGGATGCTGTGACCAGAAGAT
GGGATCACGGAACAGCAGCAGTGCAGGAACTGGGTCCGGAGACCCCTCCGAGGGCTTGCC
CCGAAGAGGGGCTGGCCTGCGTCGGAGTGAGGAAGAGGAAGAGGAGGATGAAGATGTGGA
TCTGGCCCAGGTACTGGCCTATCTCCTACGCAGAGGCCAAGTGAGGTTGGTGCAGGGAGG
AGGTGCGGCAAATTTACAACTCATCCAGGCCCTCTCAGACTCAGAGGAAGAGCATGACAA
TGCCTGGGATGGTCGTCTCGGAGACCGATACAACCCACCTGTGGATGCCACCCCTGACAC
CCGGGACCTGGAATGCAGTGAGATCAAGACACAGGTGGAATTGGCCACAGGGCGGCTAGG
ACATAGACGGGCAGCCCGGGAGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               687-873, + strand, RNAz p=0.970388

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               687-873, + strand, RNAz p=0.970388

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_025230, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_025230, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               126-873, gnl|bosTau2|chr10 (12387265-12386507)
               

               
               126-873, gnl|Hg17|chr14 (23654039-23654798)
               

               
               126-873, gnl|Mm7|chr14 (50427976-50428723)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-873, gnl|bosTau2|chr10 (12387265-12386507)
               

               
               126-873, gnl|Hg17|chr14 (23654039-23654798)
               

               
               126-873, gnl|Mm7|chr14 (50427976-50428723)

	126-873, gnl\|bosTau2\|chr10 (12387265-12386507)
	126-873, gnl\|Hg17\|chr14 (23654039-23654798)
	126-873, gnl\|Mm7\|chr14 (50427976-50428723)