Ss1.1-Liv1-LVRM1H060036.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACGGAGGTTTGAAACCCAGGAAGGCAGAGGGGGCACCTGGGAGGAGGCAGTGGGAGGGC GGAGGGCGGGGGCCGGGGCTCGGCCCAGAGCCTTCGGGGTGGACATCCTGGGCAGGGCAA GTGGCCGAGGTGTGGAGAGGGGAGGATGCGCCTCTCCAAAACCCTGGTCGACATGGACAT GGCCGACTACAGTGCTGCGCTGGACCCAGCCTACACCACCCTGGAATTCGAGAATGTGCA GGTGTTGACCATGGGCAATGACACATCCCCATCAGAAGGTGCCAACCTCAATGCGCCCAA CAGCCTGGGTGTCAGCGCCTTGTGTGCCATCTGTGGGGACCGGGCCACAGGCAAACACTA CGGGGCCTCGAGCTGTGACGGCTGCAAGGGCTTCTTTCGGAGGAGTGTGAGGAAGAACCA CATGTACTCCTGCAGATTTAGTCGGCAGTGCGTGGTGGACAAAGACAAGAGGAACCAGTG CCGCTACTGCAGGCTCAAGAAGTGCTTCCGGGCTGGCATGAAGAAGGAAGCCGTCCAGAA CGAACGGGACCGGATCAGCACTCGCAGGTCAAGCTACGAGGATAGCAGCCTGCCCTCCAT CAACGCGCTCCTGCAGGCTGAGGTCCTGTCCCAGCAGATCACCTCCCCTGTCTCTGGAAT CAACGGGGACATCCGGGCGAAGAAGATCGCCAGCATCGCAGATGTGTGCGAGTCCATGAA GGAGCAGCTGCTGGTGCTCGTCGAGTGGGCCAAGTACATCCCAGCTTTCTGTGAGCTCCC CCTGGACGACCAGGTGGCCCTGCTCAGAGCCCATGCCGGCGAGCACCTGCTGCTGGGAGC CACCAAGCGCTCTATGGTGTTTAAGGATGTTCTGCTTCTCGGCAATGACTACATCATCCC TCGGCACTGCCCGGAGCTGGCAGAAATGAACCGGGTGTCTGTGCGCATCCTGGATGAGCT GGTGCTGCCCTTTCAGGAGCTGCAGGTCGATGACAACGAGTACGCCTGCCTCAAAGCCAT CATCTTCTTTGACCCAGATGCCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACGGAGGTTTGAAACCCAGGAAGGCAGAGGGGGCACCTGGGAGGAGGCAGTGGGAGGGC GGAGGGCGGGGGCCGGGGCTCGGCCCAGAGCCTTCGGGGTGGACATCCTGGGCAGGGCAA GTGGCCGAGGTGTGGAGAGGGGAGGATGCGCCTCTCCAAAACCCTGGTCGACATGGACAT GGCCGACTACAGTGCTGCGCTGGACCCAGCCTACACCACCCTGGAATTCGAGAATGTGCA GGTGTTGACCATGGGCAATGACACATCCCCATCAGAAGGTGCCAACCTCAATGCGCCCAA CAGCCTGGGTGTCAGCGCCTTGTGTGCCATCTGTGGGGACCGGGCCACAGGCAAACACTA CGGGGCCTCGAGCTGTGACGGCTGCAAGGGCTTCTTTCGGAGGAGTGTGAGGAAGAACCA CATGTACTCCTGCAGATTTAGTCGGCAGTGCGTGGTGGACAAAGACAAGAGGAACCAGTG CCGCTACTGCAGGCTCAAGAAGTGCTTCCGGGCTGGCATGAAGAAGGAAGCCGTCCAGAA CGAACGGGACCGGATCAGCACTCGCAGGTCAAGCTACGAGGATAGCAGCCTGCCCTCCAT CAACGCGCTCCTGCAGGCTGAGGTCCTGTCCCAGCAGATCACCTCCCCTGTCTCTGGAAT CAACGGGGACATCCGGGCGAAGAAGATCGCCAGCATCGCAGATGTGTGCGAGTCCATGAA GGAGCAGCTGCTGGTGCTCGTCGAGTGGGCCAAGTACATCCCAGCTTTCTGTGAGCTCCC CCTGGACGACCAGGTGGCCCTGCTCAGAGCCCATGCCGGCGAGCACCTGCTGCTGGGAGC CACCAAGCGCTCTATGGTGTTTAAGGATGTTCTGCTTCTCGGCAATGACTACATCATCCC TCGGCACTGCCCGGAGCTGGCAGAAATGAACCGGGTGTCTGTGCGCATCCTGGATGAGCT GGTGCTGCCCTTTCAGGAGCTGCAGGTCGATGACAACGAGTACGCCTGCCTCAAAGCCAT CATCTTCTTTGACCCAGATGCCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 46-160, - strand, RNAz p=0.770943 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 46-160, - strand, RNAz p=0.770943 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 7-260, gnl|bosTau2|chr13 (53697162-53696917) | |
| 7-260, gnl|Hg17|chr20 (42463310-42463541) | |
| 7-260, gnl|Mm7|chr2 (163288052-163288309) | |
| 417-530, gnl|bosTau2|chr13 (53691508-53691396) | |
| 417-530, gnl|Hg17|chr20 (42469417-42469529) | |
| 417-530, gnl|Mm7|chr2 (163293432-163293544) | |
| 628-796, gnl|bosTau2|chr13 (53684209-53684041) | |
| 628-796, gnl|Hg17|chr20 (42476550-42476719) | |
| 628-796, gnl|Mm7|chr2 (163299834-163300003) | |
| 881-1037, gnl|bosTau2|chr13 (53679593-53679437) | |
| 881-1037, gnl|canFam2|chr24 (34870857-34871054) | |
| 881-1037, gnl|danRer3|chr23 (38741722-38741901) | |
| 881-1037, gnl|dasNov1|scaffold_33782 (39189-38992) | |
| 881-1037, gnl|echTel1|scaffold_315885 (1001-1145) | |
| 881-1037, gnl|fr1|chrUn (209395376-209395529) | |
| 881-1037, gnl|galGal2|chr20 (5152956-5152797) | |
| 881-1037, gnl|hg17|chr20 (42481769-42481970) | |
| 881-1037, gnl|Hg17|chr20 (42481774-42481930) | |
| 881-1037, gnl|loxAfr1|scaffold_10722 (124964-124803) | |
| 881-1037, gnl|mm7|chr2 (163305038-163305237) | |
| 881-1037, gnl|Mm7|chr2 (163305043-163305199) | |
| 881-1037, gnl|monDom2|scaffold_1 (157354256-157354090) | |
| 881-1037, gnl|oryCun1|scaffold_55683 (340-144) | |
| 881-1037, gnl|panTro1|chr21 (44923634-44923835) | |
| 881-1037, gnl|rheMac2|chr10 (20030472-20030271) | |
| 881-1037, gnl|rn3|chr3 (154382971-154383170) | |
| 881-1037, gnl|tetNig1|chr9 (10117514-10117352) | |
| 881-1037, gnl|xenTro1|scaffold_184 (573160-573318) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-260, gnl|bosTau2|chr13 (53697162-53696917) | |
| 7-260, gnl|Hg17|chr20 (42463310-42463541) | |
| 7-260, gnl|Mm7|chr2 (163288052-163288309) | |
| 417-530, gnl|bosTau2|chr13 (53691508-53691396) | |
| 417-530, gnl|Hg17|chr20 (42469417-42469529) | |
| 417-530, gnl|Mm7|chr2 (163293432-163293544) | |
| 628-796, gnl|bosTau2|chr13 (53684209-53684041) | |
| 628-796, gnl|Hg17|chr20 (42476550-42476719) | |
| 628-796, gnl|Mm7|chr2 (163299834-163300003) | |
| 881-1037, gnl|bosTau2|chr13 (53679593-53679437) | |
| 881-1037, gnl|canFam2|chr24 (34870857-34871054) | |
| 881-1037, gnl|danRer3|chr23 (38741722-38741901) | |
| 881-1037, gnl|dasNov1|scaffold_33782 (39189-38992) | |
| 881-1037, gnl|echTel1|scaffold_315885 (1001-1145) | |
| 881-1037, gnl|fr1|chrUn (209395376-209395529) | |
| 881-1037, gnl|galGal2|chr20 (5152956-5152797) | |
| 881-1037, gnl|hg17|chr20 (42481769-42481970) | |
| 881-1037, gnl|Hg17|chr20 (42481774-42481930) | |
| 881-1037, gnl|loxAfr1|scaffold_10722 (124964-124803) | |
| 881-1037, gnl|mm7|chr2 (163305038-163305237) | |
| 881-1037, gnl|Mm7|chr2 (163305043-163305199) | |
| 881-1037, gnl|monDom2|scaffold_1 (157354256-157354090) | |
| 881-1037, gnl|oryCun1|scaffold_55683 (340-144) | |
| 881-1037, gnl|panTro1|chr21 (44923634-44923835) | |
| 881-1037, gnl|rheMac2|chr10 (20030472-20030271) | |
| 881-1037, gnl|rn3|chr3 (154382971-154383170) | |
| 881-1037, gnl|tetNig1|chr9 (10117514-10117352) | |
| 881-1037, gnl|xenTro1|scaffold_184 (573160-573318) |