Ss1.1-Liv1-LVRM1H070038.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATACTGGCCCCAACGGACCCAGGGACCTGGAGCTGCAGCGCGGCGGCCTCGTGGGCAGAC CCAGAGCATGGACAGCCTCTTCGTAGAGGAAGTGGCGGCCTCCCTGGTCAGGGAGTTCCT CAGCAGAAAGGGCTTAAAGAAGACGTGTGTGACCATGGACCAGGAACGCCCACGCTCTGA TCTCAGCATAAACAGCAGAAATGTTCTCCGAAAGGTTTTGCATCTTGAATTTCTCTACAG AGAGAACAAGGCAAAGGAAAATCCTCTGAAAACAAACCTTGAACTCATTACCAGATATTT TCTGGATCACTTTGAAAATACTGCCAACAATTTCACTCAAGAAACATCAATCCCTGCACT CTCAGTTTCAAAGAAAAATAACAAATTACCATTGAGATGCTCAGAGACCACGCTGGTAAA TATATACGACCTTGCAGATGAAGATGCAAGTTGGAGAACATCATTGTCGGAAGGGAGCAA AGCCAGACACAACAATCTTGATGGGGATGTACTGGGTAATTTTGTGTCATCTAGAAGGCC TTCACACCAAAGTAAGCCGGTGCAGACTGTCCCAGGTGAAAGGCCCCCTCTGACTCCTGC TTGGGAGAAGACGGACAAGTTTCAGTCGTCAGAGCCTGTCTTGGACACGAAGAGGATGGG CGAGAAGATCAGGTCCAAGTCTGGCCTGATTTTCCGAGGCATGATGGCCGGGCCCATCGC CAGCTCCCCACAGGATTCCCTCCGCAAACGCTCGCTGAGGTGGTCCTCAGCCTCGAGCAG CTCAACCCAGCCCCCCGAGGAAGAGAGCCCACCCGTTCCCGACACCCCAGCCTGTCCTGC CCCTCAGGAGGGCCTGGCTTCCAGCACCGGCTGCATCCCCAGGAACCCACTGGGGCCGCT TAGCGAGGTGCCCTCGGAAGAGCAGAGAACCTCACCCAGCAGCCCTCCTCACTTGCCAGG CAAAGGGCTGCCCCAGAGGGGGAGTGACAGGTGGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATACTGGCCCCAACGGACCCAGGGACCTGGAGCTGCAGCGCGGCGGCCTCGTGGGCAGAC CCAGAGCATGGACAGCCTCTTCGTAGAGGAAGTGGCGGCCTCCCTGGTCAGGGAGTTCCT CAGCAGAAAGGGCTTAAAGAAGACGTGTGTGACCATGGACCAGGAACGCCCACGCTCTGA TCTCAGCATAAACAGCAGAAATGTTCTCCGAAAGGTTTTGCATCTTGAATTTCTCTACAG AGAGAACAAGGCAAAGGAAAATCCTCTGAAAACAAACCTTGAACTCATTACCAGATATTT TCTGGATCACTTTGAAAATACTGCCAACAATTTCACTCAAGAAACATCAATCCCTGCACT CTCAGTTTCAAAGAAAAATAACAAATTACCATTGAGATGCTCAGAGACCACGCTGGTAAA TATATACGACCTTGCAGATGAAGATGCAAGTTGGAGAACATCATTGTCGGAAGGGAGCAA AGCCAGACACAACAATCTTGATGGGGATGTACTGGGTAATTTTGTGTCATCTAGAAGGCC TTCACACCAAAGTAAGCCGGTGCAGACTGTCCCAGGTGAAAGGCCCCCTCTGACTCCTGC TTGGGAGAAGACGGACAAGTTTCAGTCGTCAGAGCCTGTCTTGGACACGAAGAGGATGGG CGAGAAGATCAGGTCCAAGTCTGGCCTGATTTTCCGAGGCATGATGGCCGGGCCCATCGC CAGCTCCCCACAGGATTCCCTCCGCAAACGCTCGCTGAGGTGGTCCTCAGCCTCGAGCAG CTCAACCCAGCCCCCCGAGGAAGAGAGCCCACCCGTTCCCGACACCCCAGCCTGTCCTGC CCCTCAGGAGGGCCTGGCTTCCAGCACCGGCTGCATCCCCAGGAACCCACTGGGGCCGCT TAGCGAGGTGCCCTCGGAAGAGCAGAGAACCTCACCCAGCAGCCCTCCTCACTTGCCAGG CAAAGGGCTGCCCCAGAGGGGGAGTGACAGGTGGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 878-995, - strand, RNAz p=0.991707 | |
| 878-995, - strand, RNAz p=0.920777 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 878-995, - strand, RNAz p=0.991707 | |
| 878-995, - strand, RNAz p=0.920777 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 249-486, gnl|bosTau2|chr4 (36261277-36261040) | |
| 249-486, gnl|canFam2|chr14 (46435791-46436058) | |
| 249-486, gnl|dasNov1|scaffold_3911 (85931-86196) | |
| 249-486, gnl|hg17|chr7 (30594762-30595029) | |
| 249-486, gnl|Hg17|chr7 (30594831-30595068) | |
| 249-486, gnl|loxAfr1|scaffold_6408 (18945-19213) | |
| 249-486, gnl|mm7|chr6 (55179808-55180073) | |
| 249-486, gnl|Mm7|chr6 (55179875-55180112) | |
| 249-486, gnl|monDom2|scaffold_237 (50792-51073) | |
| 249-486, gnl|oryCun1|scaffold_189227 (5589-5857) | |
| 249-486, gnl|panTro1|chr6 (31698170-31698437) | |
| 249-486, gnl|rheMac2|chr3 (95453222-95452954) | |
| 249-486, gnl|rn3|chr4 (84271627-84271892) | |
| 731-995, gnl|bosTau2|chr4 (36253167-36252891) | |
| 731-995, gnl|canFam2|chr14 (46443104-46443317) | |
| 731-995, gnl|hg17|chr7 (30604000-30604206) | |
| 731-995, gnl|Hg17|chr7 (30604018-30604276) | |
| 731-995, gnl|loxAfr1|scaffold_6408 (29636-29854) | |
| 731-995, gnl|mm7|chr6 (55187348-55187568) | |
| 731-995, gnl|Mm7|chr6 (55187365-55187620) | |
| 731-995, gnl|monDom2|scaffold_237 (57224-57436) | |
| 731-995, gnl|oryCun1|scaffold_189227 (16361-16585) | |
| 731-995, gnl|panTro1|chr6 (31707341-31707547) | |
| 731-995, gnl|rheMac2|chr3 (95443938-95443732) | |
| 731-995, gnl|rn3|chr4 (84278643-84278862) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 249-486, gnl|bosTau2|chr4 (36261277-36261040) | |
| 249-486, gnl|canFam2|chr14 (46435791-46436058) | |
| 249-486, gnl|dasNov1|scaffold_3911 (85931-86196) | |
| 249-486, gnl|hg17|chr7 (30594762-30595029) | |
| 249-486, gnl|Hg17|chr7 (30594831-30595068) | |
| 249-486, gnl|loxAfr1|scaffold_6408 (18945-19213) | |
| 249-486, gnl|mm7|chr6 (55179808-55180073) | |
| 249-486, gnl|Mm7|chr6 (55179875-55180112) | |
| 249-486, gnl|monDom2|scaffold_237 (50792-51073) | |
| 249-486, gnl|oryCun1|scaffold_189227 (5589-5857) | |
| 249-486, gnl|panTro1|chr6 (31698170-31698437) | |
| 249-486, gnl|rheMac2|chr3 (95453222-95452954) | |
| 249-486, gnl|rn3|chr4 (84271627-84271892) | |
| 731-995, gnl|bosTau2|chr4 (36253167-36252891) | |
| 731-995, gnl|canFam2|chr14 (46443104-46443317) | |
| 731-995, gnl|hg17|chr7 (30604000-30604206) | |
| 731-995, gnl|Hg17|chr7 (30604018-30604276) | |
| 731-995, gnl|loxAfr1|scaffold_6408 (29636-29854) | |
| 731-995, gnl|mm7|chr6 (55187348-55187568) | |
| 731-995, gnl|Mm7|chr6 (55187365-55187620) | |
| 731-995, gnl|monDom2|scaffold_237 (57224-57436) | |
| 731-995, gnl|oryCun1|scaffold_189227 (16361-16585) | |
| 731-995, gnl|panTro1|chr6 (31707341-31707547) | |
| 731-995, gnl|rheMac2|chr3 (95443938-95443732) | |
| 731-995, gnl|rn3|chr4 (84278643-84278862) |