Non-Coding RNA Search

Ss1.1-Lng1-LNG010001B10.5

Sequence:


               
               GTTTAATCCCATGCACACACATTCAGGACTTTTTAGTTTTCTCACCCCACCCCCATCATT
CCTTTTTTAGAGGGGGGGAAAGGGTAGAAATAGAAACCTAAGAAATCCTGGAAAAACTTG
TGTTTTCTAAGGAAACTTCAACAGATGGACGGTTTAGGACTCAACCAGGCATTTTGAAGC
GGTAAAGTTGGAAGGAACATCTATCGATTGATGGGGCAGAGTCCAGAATTTCACTGTAAT
TAGTGAATGATTATAATTTATAACTCAGCTTGTTGTGTAAGAAGTTAGATTTTGGTTTCT
TAGATCCAAGAGTTCTTTGCTGTTACAATTTGTAACTGCGTCTTAATATTAAACGTTTAC
ATATTTCATTCTCAATGAGTTGAGTTTTTTTCTTTTGACCTTCAAAAGTTAGAGATAATT
CCGCATATTTCAGACCGACTTACCAGTAAAAATGTCATCATAACCAAAAGTAAGGGTTTG
TAGTTTAATTGGAAGCCAGTTATGGCAAACAAAAAGTCCTGACAGCTCAGTGAACCATGA
CCCCACTTTTCTCTTTCTCTGCTTTCCCGAGGACTTTATTAGGCAAATATTCAGTATACC
AAAGCTAGCTAAAGATGTTTAAACATAGTAGTGGAAAATTTGAAACTCTGGATGTTTAAC
ATTTGACGTGGGTCGATTTCTTGTGTTTTCAAGGACACTGTACTTTTATTCTTAGTATTA
TGGCATATAAGCTTCGTTGTTTTTAGAGCATTTTCACACAATTTCCTTTTGATAGAGAAC
AGACCACTGAGCTCTAAATGGGGTATCTGGGACATGGTTCCGTTATGTGCTTTATACCAA
AAAAAGGCTTAAAGCAAATAAGGGACTTTATTCATTTAATAACTATTCCTAGAACATTCA
CGGTGCCCCAGACACAGTGCTTGTTCTGTGGATTCAACTGGGAACAGGAAGACAATTTCT
TTACCTTCTGGGGAGATTGCATTCTAGCTGATGAGCTGACAATACCTAACTAAAAATAAA
TACAGTATTACCTTTTCCAGTGAGTTCTGTGGAAGGTGATAATACTTAACTGTATATCTG
ATAGGGTTGCAAAGGGAACAAGTGAGATACTGTTATGAAAGAAGGTTGCATAAGTTACAG
CAACCTACAAATGTATAAGGTGTTCACTTTCAGAATTCTGTCAGATTATTCTTCATTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTAATCCCATGCACACACATTCAGGACTTTTTAGTTTTCTCACCCCACCCCCATCATT
CCTTTTTTAGAGGGGGGGAAAGGGTAGAAATAGAAACCTAAGAAATCCTGGAAAAACTTG
TGTTTTCTAAGGAAACTTCAACAGATGGACGGTTTAGGACTCAACCAGGCATTTTGAAGC
GGTAAAGTTGGAAGGAACATCTATCGATTGATGGGGCAGAGTCCAGAATTTCACTGTAAT
TAGTGAATGATTATAATTTATAACTCAGCTTGTTGTGTAAGAAGTTAGATTTTGGTTTCT
TAGATCCAAGAGTTCTTTGCTGTTACAATTTGTAACTGCGTCTTAATATTAAACGTTTAC
ATATTTCATTCTCAATGAGTTGAGTTTTTTTCTTTTGACCTTCAAAAGTTAGAGATAATT
CCGCATATTTCAGACCGACTTACCAGTAAAAATGTCATCATAACCAAAAGTAAGGGTTTG
TAGTTTAATTGGAAGCCAGTTATGGCAAACAAAAAGTCCTGACAGCTCAGTGAACCATGA
CCCCACTTTTCTCTTTCTCTGCTTTCCCGAGGACTTTATTAGGCAAATATTCAGTATACC
AAAGCTAGCTAAAGATGTTTAAACATAGTAGTGGAAAATTTGAAACTCTGGATGTTTAAC
ATTTGACGTGGGTCGATTTCTTGTGTTTTCAAGGACACTGTACTTTTATTCTTAGTATTA
TGGCATATAAGCTTCGTTGTTTTTAGAGCATTTTCACACAATTTCCTTTTGATAGAGAAC
AGACCACTGAGCTCTAAATGGGGTATCTGGGACATGGTTCCGTTATGTGCTTTATACCAA
AAAAAGGCTTAAAGCAAATAAGGGACTTTATTCATTTAATAACTATTCCTAGAACATTCA
CGGTGCCCCAGACACAGTGCTTGTTCTGTGGATTCAACTGGGAACAGGAAGACAATTTCT
TTACCTTCTGGGGAGATTGCATTCTAGCTGATGAGCTGACAATACCTAACTAAAAATAAA
TACAGTATTACCTTTTCCAGTGAGTTCTGTGGAAGGTGATAATACTTAACTGTATATCTG
ATAGGGTTGCAAAGGGAACAAGTGAGATACTGTTATGAAAGAAGGTTGCATAAGTTACAG
CAACCTACAAATGTATAAGGTGTTCACTTTCAGAATTCTGTCAGATTATTCTTCATTTTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               811-925, - strand, RNAz p=0.876975

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               811-925, - strand, RNAz p=0.876975

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               103-1198, gnl|bosTau2|chr27 (7759215-7758126)
               

               
               103-1198, gnl|Hg17|chr4 (185768493-185767423)
               

               
               103-1198, gnl|Mm7|chr8 (45520019-45521107)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-1198, gnl|bosTau2|chr27 (7759215-7758126)
               

               
               103-1198, gnl|Hg17|chr4 (185768493-185767423)
               

               
               103-1198, gnl|Mm7|chr8 (45520019-45521107)

	103-1198, gnl\|bosTau2\|chr27 (7759215-7758126)
	103-1198, gnl\|Hg17\|chr4 (185768493-185767423)
	103-1198, gnl\|Mm7\|chr8 (45520019-45521107)