Non-Coding RNA Search

Ss1.1-Lng1-LNG010001G10.5

Sequence:


               
               ACTTCCCCCTCCGTGGGGCCAGGGTTGCCCAGGGTTGCCCAGGATTGCGGATCGCCCGGG
CAAGGTCGCCAGCACCTGCCTCCCACCGGCGCAAGGGACTATGGCCACCGACTCATGGGC
CCTAGCGGTGGACCAGCAGGAAGCGGCGGCTGAGTCGTTGAGCAACTTGCATCTTAAGGA
CGAGAAAGTCAAACCAGATGCCAATGGTGCTGTTGTCAAGACCAATGCAAATGCAGAGAA
GACAGATGAAGAAGAGAAAGAGGACAGAGCTGCCCAGTCCTTACTCAACAAGCTGATCAG
AAGCAACCTTGTTGATAACACCAACCAGGTGGAAGTCCTGCAGCGGGATCCCAACTCCCC
GCTATACTCAGTGAAGTCCTTCGAGGAGCTTCGACTGAAACCACAGCTTCTCCAGGGAGT
CTACGCCATGGGCTTCAACCGTCCATCCAAGATACAAGAGAATGCGTTGCCTTTGATGCT
TGCTGAGCCCCCACAGAACTTAATTGCCCAGTCTCAGTCTGGTACTGGTAAAACAGCTGC
CTTTGTGTTGGCCATGCTCAGCCAAGTAGAACCTGCAAACAGATACCCCCAGTGTCTGTG
CCTTTCCCCAACTTATGAGCTTGCCCTTCAAACGGGGAAAGTGATTGAGCAGATGGGCAA
ATTTTACCCTGAACTGAAGCTAGCTTATGCTGTTCGTGGCAATAAATTGGAAAGAGGTCA
GAAGATCAGTGAGCACATTGTCATTGGCACCCCTGGGACCGTTCTGGACTGGTGCTCCAA
GCTCAAGTTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTCCCCCTCCGTGGGGCCAGGGTTGCCCAGGGTTGCCCAGGATTGCGGATCGCCCGGG
CAAGGTCGCCAGCACCTGCCTCCCACCGGCGCAAGGGACTATGGCCACCGACTCATGGGC
CCTAGCGGTGGACCAGCAGGAAGCGGCGGCTGAGTCGTTGAGCAACTTGCATCTTAAGGA
CGAGAAAGTCAAACCAGATGCCAATGGTGCTGTTGTCAAGACCAATGCAAATGCAGAGAA
GACAGATGAAGAAGAGAAAGAGGACAGAGCTGCCCAGTCCTTACTCAACAAGCTGATCAG
AAGCAACCTTGTTGATAACACCAACCAGGTGGAAGTCCTGCAGCGGGATCCCAACTCCCC
GCTATACTCAGTGAAGTCCTTCGAGGAGCTTCGACTGAAACCACAGCTTCTCCAGGGAGT
CTACGCCATGGGCTTCAACCGTCCATCCAAGATACAAGAGAATGCGTTGCCTTTGATGCT
TGCTGAGCCCCCACAGAACTTAATTGCCCAGTCTCAGTCTGGTACTGGTAAAACAGCTGC
CTTTGTGTTGGCCATGCTCAGCCAAGTAGAACCTGCAAACAGATACCCCCAGTGTCTGTG
CCTTTCCCCAACTTATGAGCTTGCCCTTCAAACGGGGAAAGTGATTGAGCAGATGGGCAA
ATTTTACCCTGAACTGAAGCTAGCTTATGCTGTTCGTGGCAATAAATTGGAAAGAGGTCA
GAAGATCAGTGAGCACATTGTCATTGGCACCCCTGGGACCGTTCTGGACTGGTGCTCCAA
GCTCAAGTTCAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|53127518|emb|CAG31142.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|53127518|emb|CAG31142.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               297-388, - strand, RNAz p=0.514492

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               297-388, - strand, RNAz p=0.514492

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-162, gnl|bosTau2|chr18 (460975-460814)
               

               
               1-162, gnl|canFam2|chr5 (79321301-79321901)
               

               
               1-162, gnl|dasNov1|scaffold_32108 (15116-15731)
               

               
               1-162, gnl|echTel1|scaffold_287597 (41156-40527)
               

               
               1-162, gnl|hg17|chr16 (68890336-68890980)
               

               
               1-162, gnl|Hg17|chr16 (68890607-68890763)
               

               
               1-162, gnl|loxAfr1|scaffold_27562 (25565-26212)
               

               
               1-162, gnl|mm7|chr8 (109628186-109627561)
               

               
               1-162, gnl|Mm7|chr8 (109627933-109627769)
               

               
               1-162, gnl|oryCun1|scaffold_104210 (3228-2605)
               

               
               1-162, gnl|panTro1|chr18 (63237754-63238398)
               

               
               1-162, gnl|rheMac2|chr20 (72368173-72367520)
               

               
               1-162, gnl|rn3|chr19 (40952540-40951929)
               


               
               217-388, gnl|bosTau2|chr15 (702638-702471)
               

               
               217-388, gnl|Hg17|chr1 (184943395-184943203)
               


               
               416-557, gnl|bosTau2|chr15 (702474-702333)
               

               
               416-557, gnl|Mm7|chr8 (109620879-109615776)
               


               
               587-792, gnl|bosTau2|chr15 (702323-702127)
               

               
               587-792, gnl|Hg17|chr16 (68916974-68920780)
               

               
               587-792, gnl|Mm7|chr8 (109613050-109611554)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-162, gnl|bosTau2|chr18 (460975-460814)
               

               
               1-162, gnl|canFam2|chr5 (79321301-79321901)
               

               
               1-162, gnl|dasNov1|scaffold_32108 (15116-15731)
               

               
               1-162, gnl|echTel1|scaffold_287597 (41156-40527)
               

               
               1-162, gnl|hg17|chr16 (68890336-68890980)
               

               
               1-162, gnl|Hg17|chr16 (68890607-68890763)
               

               
               1-162, gnl|loxAfr1|scaffold_27562 (25565-26212)
               

               
               1-162, gnl|mm7|chr8 (109628186-109627561)
               

               
               1-162, gnl|Mm7|chr8 (109627933-109627769)
               

               
               1-162, gnl|oryCun1|scaffold_104210 (3228-2605)
               

               
               1-162, gnl|panTro1|chr18 (63237754-63238398)
               

               
               1-162, gnl|rheMac2|chr20 (72368173-72367520)
               

               
               1-162, gnl|rn3|chr19 (40952540-40951929)
               


               
               217-388, gnl|bosTau2|chr15 (702638-702471)
               

               
               217-388, gnl|Hg17|chr1 (184943395-184943203)
               


               
               416-557, gnl|bosTau2|chr15 (702474-702333)
               

               
               416-557, gnl|Mm7|chr8 (109620879-109615776)
               


               
               587-792, gnl|bosTau2|chr15 (702323-702127)
               

               
               587-792, gnl|Hg17|chr16 (68916974-68920780)
               

               
               587-792, gnl|Mm7|chr8 (109613050-109611554)

	1-162, gnl\|bosTau2\|chr18 (460975-460814)
	1-162, gnl\|canFam2\|chr5 (79321301-79321901)
	1-162, gnl\|dasNov1\|scaffold_32108 (15116-15731)
	1-162, gnl\|echTel1\|scaffold_287597 (41156-40527)
	1-162, gnl\|hg17\|chr16 (68890336-68890980)
	1-162, gnl\|Hg17\|chr16 (68890607-68890763)
	1-162, gnl\|loxAfr1\|scaffold_27562 (25565-26212)
	1-162, gnl\|mm7\|chr8 (109628186-109627561)
	1-162, gnl\|Mm7\|chr8 (109627933-109627769)
	1-162, gnl\|oryCun1\|scaffold_104210 (3228-2605)
	1-162, gnl\|panTro1\|chr18 (63237754-63238398)
	1-162, gnl\|rheMac2\|chr20 (72368173-72367520)
	1-162, gnl\|rn3\|chr19 (40952540-40951929)

	217-388, gnl\|bosTau2\|chr15 (702638-702471)
	217-388, gnl\|Hg17\|chr1 (184943395-184943203)

	416-557, gnl\|bosTau2\|chr15 (702474-702333)
	416-557, gnl\|Mm7\|chr8 (109620879-109615776)

	587-792, gnl\|bosTau2\|chr15 (702323-702127)
	587-792, gnl\|Hg17\|chr16 (68916974-68920780)
	587-792, gnl\|Mm7\|chr8 (109613050-109611554)