Non-Coding RNA Search

Ss1.1-Lng1-LNG010003A04.5

Sequence:


               
               TCTGTTAAAGCACACTGGGACATTCCACCAGTGTTTTCAGGGCTCCTCTGAACTGTCGTC
GGGCTTAGATTTTTAATTTTGCAGGGCAGGAAGGAGCAAATGAGTGCCTCCTGGCTCCAA
GGAAAGCTACTACGTTTATCAACTGCTTGGCAGCTCAGTGACCTTTGAGGCCTGAGGAAG
GGAAAGAAAATGGCACTCTTCCGTCTGAGGGTATCTGAGGCTTCAGGAGGGAGTAGAGTT
AGGATACCTGAGTATACCTCTCTTCTTCCTGCCCTTCCCTCTTTCCCTCCGATTCCTCTC
TCCCTTCCTCCTGGGAGGCCACAGCTCCCCCACGCTGTTTTTTGTTATGTTCTCATAGAC
ATGCGCATGCATTTGAGTACATTTGATGTGTGCTGTATCGTGGAAAGAACATTGGCGTGG
GGGACCCAGATACGGCAACCATGAGAACATGGGCAAACTGTTTAATCTCTAGCCTCAGTG
TCTTCATCCATCAAATGGGTACAGAATGCCATAGGAAACCCTACCCCTTCAGAATTTTAA
TGGAGTCTAGACCAACCATCAAGCTGCTTGATTCTTCTGGTATGTGCCTGACAAACATCT
ATTAAATTACAGCTGCTCAGAATGTTTGTTGATGGAAACAGTGTGTCACAGCAGTTAGTA
AGGTGCGTTGGGTAATACAAAGGTTTTGGTGTTCAACTGAGTTCAGTGTTAGCTCCACTG
ATGTGAAGACACAGGGCTTTGGACAAATTATTTTATCTCTATTACCCTCCCTTTCCTCAT
CTCTCTGCAGAAGTGTCATGAGGATTGCATTAAGTGGTACATGTAAGGGTTGAGCCACAG
GAGGAACACAACAGCTAGTAGCTCTCATTTTATTGTTGTGGGAGTCAGTAAGATGATGGA
TGCAGAGTGTGTAACTCAGTCCCTGGCCCGTGCAGGCCCCCGTAAAGTTAGCTGTGCCTC
GGCTCACACGTAACCAGGAGTATAGTCAGCCTAAGAGGTGACAGTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTTAAAGCACACTGGGACATTCCACCAGTGTTTTCAGGGCTCCTCTGAACTGTCGTC
GGGCTTAGATTTTTAATTTTGCAGGGCAGGAAGGAGCAAATGAGTGCCTCCTGGCTCCAA
GGAAAGCTACTACGTTTATCAACTGCTTGGCAGCTCAGTGACCTTTGAGGCCTGAGGAAG
GGAAAGAAAATGGCACTCTTCCGTCTGAGGGTATCTGAGGCTTCAGGAGGGAGTAGAGTT
AGGATACCTGAGTATACCTCTCTTCTTCCTGCCCTTCCCTCTTTCCCTCCGATTCCTCTC
TCCCTTCCTCCTGGGAGGCCACAGCTCCCCCACGCTGTTTTTTGTTATGTTCTCATAGAC
ATGCGCATGCATTTGAGTACATTTGATGTGTGCTGTATCGTGGAAAGAACATTGGCGTGG
GGGACCCAGATACGGCAACCATGAGAACATGGGCAAACTGTTTAATCTCTAGCCTCAGTG
TCTTCATCCATCAAATGGGTACAGAATGCCATAGGAAACCCTACCCCTTCAGAATTTTAA
TGGAGTCTAGACCAACCATCAAGCTGCTTGATTCTTCTGGTATGTGCCTGACAAACATCT
ATTAAATTACAGCTGCTCAGAATGTTTGTTGATGGAAACAGTGTGTCACAGCAGTTAGTA
AGGTGCGTTGGGTAATACAAAGGTTTTGGTGTTCAACTGAGTTCAGTGTTAGCTCCACTG
ATGTGAAGACACAGGGCTTTGGACAAATTATTTTATCTCTATTACCCTCCCTTTCCTCAT
CTCTCTGCAGAAGTGTCATGAGGATTGCATTAAGTGGTACATGTAAGGGTTGAGCCACAG
GAGGAACACAACAGCTAGTAGCTCTCATTTTATTGTTGTGGGAGTCAGTAAGATGATGGA
TGCAGAGTGTGTAACTCAGTCCCTGGCCCGTGCAGGCCCCCGTAAAGTTAGCTGTGCCTC
GGCTCACACGTAACCAGGAGTATAGTCAGCCTAAGAGGTGACAGTGTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               158-431, + strand, RNAz p=0.968502

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-431, + strand, RNAz p=0.968502

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-431, gnl|bosTau2|chr11 (76295645-76295210)
               

               
               1-431, gnl|Hg17|chr9 (123437007-123436574)
               

               
               1-431, gnl|Mm7|chr2 (37977578-37977173)
               


               
               443-803, gnl|bosTau2|chr11 (76295178-76294820)
               

               
               443-803, gnl|canFam2|chr9 (62573619-62573280)
               

               
               443-803, gnl|dasNov1|scaffold_8858 (39253-38951)
               

               
               443-803, gnl|echTel1|scaffold_286048 (60325-59989)
               

               
               443-803, gnl|hg17|chr9 (123436188-123436523)
               

               
               443-803, gnl|Hg17|chr9 (123436543-123436187)
               

               
               443-803, gnl|mm7|chr2 (37976932-37977137)
               

               
               443-803, gnl|oryCun1|scaffold_210157 (185489-185800)
               

               
               443-803, gnl|panTro1|chr11 (108181352-108181688)
               

               
               443-803, gnl|rn3|chr3 (17624328-17624544)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-431, gnl|bosTau2|chr11 (76295645-76295210)
               

               
               1-431, gnl|Hg17|chr9 (123437007-123436574)
               

               
               1-431, gnl|Mm7|chr2 (37977578-37977173)
               


               
               443-803, gnl|bosTau2|chr11 (76295178-76294820)
               

               
               443-803, gnl|canFam2|chr9 (62573619-62573280)
               

               
               443-803, gnl|dasNov1|scaffold_8858 (39253-38951)
               

               
               443-803, gnl|echTel1|scaffold_286048 (60325-59989)
               

               
               443-803, gnl|hg17|chr9 (123436188-123436523)
               

               
               443-803, gnl|Hg17|chr9 (123436543-123436187)
               

               
               443-803, gnl|mm7|chr2 (37976932-37977137)
               

               
               443-803, gnl|oryCun1|scaffold_210157 (185489-185800)
               

               
               443-803, gnl|panTro1|chr11 (108181352-108181688)
               

               
               443-803, gnl|rn3|chr3 (17624328-17624544)

	1-431, gnl\|bosTau2\|chr11 (76295645-76295210)
	1-431, gnl\|Hg17\|chr9 (123437007-123436574)
	1-431, gnl\|Mm7\|chr2 (37977578-37977173)

	443-803, gnl\|bosTau2\|chr11 (76295178-76294820)
	443-803, gnl\|canFam2\|chr9 (62573619-62573280)
	443-803, gnl\|dasNov1\|scaffold_8858 (39253-38951)
	443-803, gnl\|echTel1\|scaffold_286048 (60325-59989)
	443-803, gnl\|hg17\|chr9 (123436188-123436523)
	443-803, gnl\|Hg17\|chr9 (123436543-123436187)
	443-803, gnl\|mm7\|chr2 (37976932-37977137)
	443-803, gnl\|oryCun1\|scaffold_210157 (185489-185800)
	443-803, gnl\|panTro1\|chr11 (108181352-108181688)
	443-803, gnl\|rn3\|chr3 (17624328-17624544)