Non-Coding RNA Search

Ss1.1-Lng1-LNG010004D08.5

Sequence:


               
               AGGTATCATCTTTGACCGGCCACTGCTCTACGTGGCCGCCACCGTGTGTCTGGCGGTCTT
CATCTTCCTGGAGTACGTGCGCTACTTCCGCATCAAGCCCCTGGGCCACACGCTTCGGAG
CCTCCTGTCCCTATTCCTGGATGAACGAGACAGTGGACCGCTCATCCTGACCCACATCTA
TCTGCTGCTAGGCATGTCTCTTCCCATTTGGCTAGTCCCCAGGCCCTGCACACAGAAGGG
TAGCCTCGGGGGAGCGAGGGCCCTAGTCCCCTATGCCGGCGTCCTAGCCGTCGGTGTGGG
TGACACCGTGGCCTCCATATTCGGCAGCACCATGGGGGAGATCCGCTGGCCCGGAACCAA
AAAGACTTTTGAGGGGACCATGACATCTATATTTGCCCAGATCATTTCTGTAGCTCTGAT
CTTAATCTTTGACAGTGGAGTAGACCTAAACTACAGCTATGCTTGGATTCTGGGCTCCAT
CAGCACCGTGTCCCTCTTAGAAGCATACACTACGCAGATAGACAATCTGCTTTTGCCTCT
CTACCTCCTGATACTGCTGATGGCGTAGCTGCTGCACAGCAGCCATGGAGGAGACAGGGA
CATGGGGAAGATGAATGGTCCTCACAGCTGCCAGCCCCTTGGGCGGGAAGAGCCCAGGGG
TGAGATACAGATTTAATTTTTCAGTCGATTCAGATTTCAAATAAAAATCAAAGCACTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTATCATCTTTGACCGGCCACTGCTCTACGTGGCCGCCACCGTGTGTCTGGCGGTCTT
CATCTTCCTGGAGTACGTGCGCTACTTCCGCATCAAGCCCCTGGGCCACACGCTTCGGAG
CCTCCTGTCCCTATTCCTGGATGAACGAGACAGTGGACCGCTCATCCTGACCCACATCTA
TCTGCTGCTAGGCATGTCTCTTCCCATTTGGCTAGTCCCCAGGCCCTGCACACAGAAGGG
TAGCCTCGGGGGAGCGAGGGCCCTAGTCCCCTATGCCGGCGTCCTAGCCGTCGGTGTGGG
TGACACCGTGGCCTCCATATTCGGCAGCACCATGGGGGAGATCCGCTGGCCCGGAACCAA
AAAGACTTTTGAGGGGACCATGACATCTATATTTGCCCAGATCATTTCTGTAGCTCTGAT
CTTAATCTTTGACAGTGGAGTAGACCTAAACTACAGCTATGCTTGGATTCTGGGCTCCAT
CAGCACCGTGTCCCTCTTAGAAGCATACACTACGCAGATAGACAATCTGCTTTTGCCTCT
CTACCTCCTGATACTGCTGATGGCGTAGCTGCTGCACAGCAGCCATGGAGGAGACAGGGA
CATGGGGAAGATGAATGGTCCTCACAGCTGCCAGCCCCTTGGGCGGGAAGAGCCCAGGGG
TGAGATACAGATTTAATTTTTCAGTCGATTCAGATTTCAAATAAAAATCAAAGCACTCCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               121-240, - strand, RNAz p=0.789326
               

               
               561-675, + strand, RNAz p=0.981907

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, - strand, RNAz p=0.789326
               

               
               561-675, + strand, RNAz p=0.981907

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-720, gnl|bosTau2|chr11 (78764670-78763950)
               

               
               1-720, gnl|Hg17|chr9 (128788087-128787364)
               

               
               1-720, gnl|Mm7|chr2 (30292305-30291569)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr11 (78764670-78763950)
               

               
               1-720, gnl|Hg17|chr9 (128788087-128787364)
               

               
               1-720, gnl|Mm7|chr2 (30292305-30291569)

	121-240, - strand, RNAz p=0.789326
	561-675, + strand, RNAz p=0.981907

	1-720, gnl\|bosTau2\|chr11 (78764670-78763950)
	1-720, gnl\|Hg17\|chr9 (128788087-128787364)
	1-720, gnl\|Mm7\|chr2 (30292305-30291569)