Non-Coding RNA Search

Ss1.1-Lng1-LNG010007H01.5

Sequence:


               
               GGGTTTTAGATCAATGAAGTGCACGCAACGCAGGGAGCTGCGTCCCTCCGTCGTCTCTTG
GAGGCGGGTCACTAAAGGCCCCGCCCTCGTCCAGTTATCTCCGTCTTGAAGGTATCCCCT
GAATCTCCGAGATTTGGCCGGAGTTGGGCAGTGGACATCCAGCTCCTCCGCAGTCCCTAG
TGGCGATGGAGGACGCCCAGGAGAACCCCGCGGAGTCTAGCTCCTCTGCCCCCGTGTCCG
AAGAGCCTGCCAGCTTGGCCAGGGGCTCCCAGGTGTTGCCTCCAGAGGAATCGACGGTCT
GCACCCGACCTCTGGAGGCGGCCCCCAAGAAACTTTGTGGATATTTAAGCAAGTTGGGAG
GCAAAAGGCCCATCCGGGGTTGGAAATCCCGCTGGTTTTTCTACGACGAGAGAAAATGTC
ACCTGTATTATTCGCGGACCGCACAGGATGCAAACCCCTTGGACAGCATCGACCTCTCCT
GTGCGGTATTTGACTGCAAGGCGGACGCCGAGGAGGGGACTTTCGAAATCAAGACCCCCA
GCCGGACTATTACCTTGAAGGCCGCCACCAAGCAAGCGATGCTGTACTGGCTGCAGCAGC
TGCAGACGAAGCGCTGGGAGTTCCACAACAGCCCACCTGCACCTCCCGCCGCCCCTGATG
CTGTCCTGGCTGGGAACGGGCCTGCCCTGCGCCTTGAGCTAGAAACACAATGTACAACAT
CCGGGGCAACAAGCAAACCCAAGGAACAGGCCAGGGACCCCCAGGAGAAGATTCTTCACC
AAGCGAGGAGCCTCAGAGGGAGGAACAGCCCCCTGACCCCAGGGCCCCAGGGAAAGATCC
AGGAGATTCTCC------------CAAGTTCTCACTGACTGTCAACCTCAATCAGAAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTTTAGATCAATGAAGTGCACGCAACGCAGGGAGCTGCGTCCCTCCGTCGTCTCTTG
GAGGCGGGTCACTAAAGGCCCCGCCCTCGTCCAGTTATCTCCGTCTTGAAGGTATCCCCT
GAATCTCCGAGATTTGGCCGGAGTTGGGCAGTGGACATCCAGCTCCTCCGCAGTCCCTAG
TGGCGATGGAGGACGCCCAGGAGAACCCCGCGGAGTCTAGCTCCTCTGCCCCCGTGTCCG
AAGAGCCTGCCAGCTTGGCCAGGGGCTCCCAGGTGTTGCCTCCAGAGGAATCGACGGTCT
GCACCCGACCTCTGGAGGCGGCCCCCAAGAAACTTTGTGGATATTTAAGCAAGTTGGGAG
GCAAAAGGCCCATCCGGGGTTGGAAATCCCGCTGGTTTTTCTACGACGAGAGAAAATGTC
ACCTGTATTATTCGCGGACCGCACAGGATGCAAACCCCTTGGACAGCATCGACCTCTCCT
GTGCGGTATTTGACTGCAAGGCGGACGCCGAGGAGGGGACTTTCGAAATCAAGACCCCCA
GCCGGACTATTACCTTGAAGGCCGCCACCAAGCAAGCGATGCTGTACTGGCTGCAGCAGC
TGCAGACGAAGCGCTGGGAGTTCCACAACAGCCCACCTGCACCTCCCGCCGCCCCTGATG
CTGTCCTGGCTGGGAACGGGCCTGCCCTGCGCCTTGAGCTAGAAACACAATGTACAACAT
CCGGGGCAACAAGCAAACCCAAGGAACAGGCCAGGGACCCCCAGGAGAAGATTCTTCACC
AAGCGAGGAGCCTCAGAGGGAGGAACAGCCCCCTGACCCCAGGGCCCCAGGGAAAGATCC
AGGAGATTCTCC------------CAAGTTCTCACTGACTGTCAACCTCAATCAGAAAGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55730707|emb|CAH92074.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55730707|emb|CAH92074.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               228-344, + strand, RNAz p=0.894674

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               228-344, + strand, RNAz p=0.894674

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC071978, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC071978, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-561, gnl|bosTau2|chr8 (33445345-33445893)
               

               
               1-561, gnl|Hg17|chr9 (98097567-98097009)
               

               
               1-561, gnl|Mm7|chr4 (46664023-46663482)
               


               
               701-826, gnl|bosTau2|chr8 (33458498-33458622)
               

               
               701-826, gnl|canFam2|chr11 (58466501-58466640)
               

               
               701-826, gnl|dasNov1|scaffold_102270 (8195-8334)
               

               
               701-826, gnl|echTel1|scaffold_253353 (3260-3399)
               

               
               701-826, gnl|hg17|chr9 (98075249-98075388)
               

               
               701-826, gnl|Hg17|chr9 (98075388-98075264)
               

               
               701-826, gnl|loxAfr1|scaffold_6128 (60123-59984)
               

               
               701-826, gnl|mm7|chr4 (46643686-46643825)
               

               
               701-826, gnl|Mm7|chr4 (46643825-46643701)
               

               
               701-826, gnl|monDom2|scaffold_80 (445435-445298)
               

               
               701-826, gnl|oryCun1|scaffold_206150 (169439-169303)
               

               
               701-826, gnl|panTro1|chr11 (82292693-82292832)
               

               
               701-826, gnl|rheMac2|chr15 (37995370-37995231)
               

               
               701-826, gnl|rn3|chr5 (63206466-63206605)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-561, gnl|bosTau2|chr8 (33445345-33445893)
               

               
               1-561, gnl|Hg17|chr9 (98097567-98097009)
               

               
               1-561, gnl|Mm7|chr4 (46664023-46663482)
               


               
               701-826, gnl|bosTau2|chr8 (33458498-33458622)
               

               
               701-826, gnl|canFam2|chr11 (58466501-58466640)
               

               
               701-826, gnl|dasNov1|scaffold_102270 (8195-8334)
               

               
               701-826, gnl|echTel1|scaffold_253353 (3260-3399)
               

               
               701-826, gnl|hg17|chr9 (98075249-98075388)
               

               
               701-826, gnl|Hg17|chr9 (98075388-98075264)
               

               
               701-826, gnl|loxAfr1|scaffold_6128 (60123-59984)
               

               
               701-826, gnl|mm7|chr4 (46643686-46643825)
               

               
               701-826, gnl|Mm7|chr4 (46643825-46643701)
               

               
               701-826, gnl|monDom2|scaffold_80 (445435-445298)
               

               
               701-826, gnl|oryCun1|scaffold_206150 (169439-169303)
               

               
               701-826, gnl|panTro1|chr11 (82292693-82292832)
               

               
               701-826, gnl|rheMac2|chr15 (37995370-37995231)
               

               
               701-826, gnl|rn3|chr5 (63206466-63206605)

	1-561, gnl\|bosTau2\|chr8 (33445345-33445893)
	1-561, gnl\|Hg17\|chr9 (98097567-98097009)
	1-561, gnl\|Mm7\|chr4 (46664023-46663482)

	701-826, gnl\|bosTau2\|chr8 (33458498-33458622)
	701-826, gnl\|canFam2\|chr11 (58466501-58466640)
	701-826, gnl\|dasNov1\|scaffold_102270 (8195-8334)
	701-826, gnl\|echTel1\|scaffold_253353 (3260-3399)
	701-826, gnl\|hg17\|chr9 (98075249-98075388)
	701-826, gnl\|Hg17\|chr9 (98075388-98075264)
	701-826, gnl\|loxAfr1\|scaffold_6128 (60123-59984)
	701-826, gnl\|mm7\|chr4 (46643686-46643825)
	701-826, gnl\|Mm7\|chr4 (46643825-46643701)
	701-826, gnl\|monDom2\|scaffold_80 (445435-445298)
	701-826, gnl\|oryCun1\|scaffold_206150 (169439-169303)
	701-826, gnl\|panTro1\|chr11 (82292693-82292832)
	701-826, gnl\|rheMac2\|chr15 (37995370-37995231)
	701-826, gnl\|rn3\|chr5 (63206466-63206605)