Non-Coding RNA Search

Ss1.1-Lng1-LNG010008H04.5

Sequence:


               
               AATTCAAAAAGGTACATGGACTCCAATGTTCACTGGCAGCACTATTTACAATAGCCAAGA
CGTGGAAGCATCCTAAATATCTATCTACAGAGGAATGGATAAAGAAGATGTGGTACATAT
ATACAATGGAATATTACTCAGCCATGAAAAAGAATGAAATAATGCCATTTGCAGCAACAT
GGATGGACCTAGAAACTATCATACTCAGTAAAGTTAGACAGTGAAAGACAAACATCATGT
GAGATCACCTATATGTGGAATCTCAAAAAAGGGATATAAAATGAACTTATTTGCAGAATG
GAATCAGACTCACAGACTTTGAAAAACTTACAGTTACCAAAGGGGACAGGTGGGTGGGTG
GGAGGGATGAACAGGGGTTTGGGATTGACATATGCACACTGAGGTATATGGAATGAATGG
TCAATGGGGACTTGCTATATAGCAGAGGGATTTCTGCCCAATATTCTGTGATAATCTATG
TGGGAAAGAATTTGAAAGAGAATGGATGTATGTATATGTATGGCTGGGTCACTCTGATGT
ACAGCAGAAATTATCACAGCCTTGTAAATTAACTACACTTCAGTAAAACTTAAAAAAATA
CCAAAGAACTTGGAGTTCCCGACGTGGCACAGTGGTTAACGAATCCGACTAGGAACCATG
AGGTGGCGGGTTCGGTCCCTGGCCTTGCTCTGTGGGTTAAGGATCCGGTGTTGGCGTGAG
CTGTGGTGTAGGTCACAGACGCGGCTCAGATCCCGCGTTGCTGTGGCTCTGTCGTAGGCT
GGCGGCTCTGGCTCTGATTAAACACCTAGCCTGGGAACCTCCATATGCTGCAGCAGTGGC
CCAAGAAAAAGGCAATAATAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCAAAAAGGTACATGGACTCCAATGTTCACTGGCAGCACTATTTACAATAGCCAAGA
CGTGGAAGCATCCTAAATATCTATCTACAGAGGAATGGATAAAGAAGATGTGGTACATAT
ATACAATGGAATATTACTCAGCCATGAAAAAGAATGAAATAATGCCATTTGCAGCAACAT
GGATGGACCTAGAAACTATCATACTCAGTAAAGTTAGACAGTGAAAGACAAACATCATGT
GAGATCACCTATATGTGGAATCTCAAAAAAGGGATATAAAATGAACTTATTTGCAGAATG
GAATCAGACTCACAGACTTTGAAAAACTTACAGTTACCAAAGGGGACAGGTGGGTGGGTG
GGAGGGATGAACAGGGGTTTGGGATTGACATATGCACACTGAGGTATATGGAATGAATGG
TCAATGGGGACTTGCTATATAGCAGAGGGATTTCTGCCCAATATTCTGTGATAATCTATG
TGGGAAAGAATTTGAAAGAGAATGGATGTATGTATATGTATGGCTGGGTCACTCTGATGT
ACAGCAGAAATTATCACAGCCTTGTAAATTAACTACACTTCAGTAAAACTTAAAAAAATA
CCAAAGAACTTGGAGTTCCCGACGTGGCACAGTGGTTAACGAATCCGACTAGGAACCATG
AGGTGGCGGGTTCGGTCCCTGGCCTTGCTCTGTGGGTTAAGGATCCGGTGTTGGCGTGAG
CTGTGGTGTAGGTCACAGACGCGGCTCAGATCCCGCGTTGCTGTGGCTCTGTCGTAGGCT
GGCGGCTCTGGCTCTGATTAAACACCTAGCCTGGGAACCTCCATATGCTGCAGCAGTGGC
CCAAGAAAAAGGCAATAATAATAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56492562|emb|CAI01941.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56492562|emb|CAI01941.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               478-597, - strand, RNAz p=0.938931

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               478-597, - strand, RNAz p=0.938931

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               1-597, gnl|bosTau2|chr10 (16598286-16598875)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-597, gnl|bosTau2|chr10 (16598286-16598875)