Non-Coding RNA Search

Ss1.1-Lng1-LNG010012B12.5

Sequence:


               
               CAGAACTTTTTGAATGTTTCCTTCCCTCTGGCTCCTGTATGATCTGAAAGTACCGGTTGA
TCTAAAGCATGGAATTTCAGCATTTTCCCCTTCTAGGCAGACATCCGGGGACTTGGAGGA
TAGAGTGGAGGGGGTATCTGGACCTGAGCATTTCTCTGGGTTTAAATCCCTCCCTGTCAT
TTAGTCCCCTGGCTGTTTGGACAGTTTATTTGAACTGAGCCCCAGTTTCCTCATCTGCAA
AATGGGTGCAGTCGTGATAGTGCCCACCTCCCAGAGTTATTTTTGAAGATAGACACTAAG
ATTCGGGTGAACTGGTAGATTCTCCTAGAATGGCATGTGGCCCTTAAGAGCATCAGTGCA
CTCACCAAGTGCTTAGCGACGGTCATTCCTGTTGTCATCCGTGTCCTCACTGCTTCTTCA
CTACCGCCAGGTCCTGCCTGGCTCCCGCAGCCCTGCCCACACCCCTCCCTACCATCCCCA
GCACCTTGGGCGTTTCTGGCTGACCTGCCCTCTTTCTGCCTCCTCTAGCTTAGCTTTCTT
TGGAGTTATTTTCGGAATCCCCTCCCTCTTGGATGGGAGGCGGGTGGCTGAGGCCTGGCT
TCATTTCATAGCAGAAGTCCAGCTTGGGAGGGAAAGCACTTTATAAGCTCGCGATGAAAG
CTGTAAAACGAGATGGTCAGGGATCTGGCCGGGCCTGGTTCAGGATTACGGCGGCCCCTG
GAATGCCGAGGGGGCCCCTCTTAAGAAGCCAGTGTCTATTTACAGTGTATCTCTCATAAA
CCCCAGCGCTGGGGCGAGGGCAGGGGACTTGCCCTCCTGGCATGTGATTGATTATCTGGT
ATTTATGCCATTGAGGACTTGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAACTTTTTGAATGTTTCCTTCCCTCTGGCTCCTGTATGATCTGAAAGTACCGGTTGA
TCTAAAGCATGGAATTTCAGCATTTTCCCCTTCTAGGCAGACATCCGGGGACTTGGAGGA
TAGAGTGGAGGGGGTATCTGGACCTGAGCATTTCTCTGGGTTTAAATCCCTCCCTGTCAT
TTAGTCCCCTGGCTGTTTGGACAGTTTATTTGAACTGAGCCCCAGTTTCCTCATCTGCAA
AATGGGTGCAGTCGTGATAGTGCCCACCTCCCAGAGTTATTTTTGAAGATAGACACTAAG
ATTCGGGTGAACTGGTAGATTCTCCTAGAATGGCATGTGGCCCTTAAGAGCATCAGTGCA
CTCACCAAGTGCTTAGCGACGGTCATTCCTGTTGTCATCCGTGTCCTCACTGCTTCTTCA
CTACCGCCAGGTCCTGCCTGGCTCCCGCAGCCCTGCCCACACCCCTCCCTACCATCCCCA
GCACCTTGGGCGTTTCTGGCTGACCTGCCCTCTTTCTGCCTCCTCTAGCTTAGCTTTCTT
TGGAGTTATTTTCGGAATCCCCTCCCTCTTGGATGGGAGGCGGGTGGCTGAGGCCTGGCT
TCATTTCATAGCAGAAGTCCAGCTTGGGAGGGAAAGCACTTTATAAGCTCGCGATGAAAG
CTGTAAAACGAGATGGTCAGGGATCTGGCCGGGCCTGGTTCAGGATTACGGCGGCCCCTG
GAATGCCGAGGGGGCCCCTCTTAAGAAGCCAGTGTCTATTTACAGTGTATCTCTCATAAA
CCCCAGCGCTGGGGCGAGGGCAGGGGACTTGCCCTCCTGGCATGTGATTGATTATCTGGT
ATTTATGCCATTGAGGACTTGTCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               718-864, - strand, RNAz p=0.813023

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               718-864, - strand, RNAz p=0.813023

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-864, gnl|bosTau2|chr15 (10944461-10943590)
               

               
               1-864, gnl|Hg17|chr11 (113587067-113587958)
               

               
               1-864, gnl|Mm7|chr9 (48667729-48666917)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-864, gnl|bosTau2|chr15 (10944461-10943590)
               

               
               1-864, gnl|Hg17|chr11 (113587067-113587958)
               

               
               1-864, gnl|Mm7|chr9 (48667729-48666917)

	1-864, gnl\|bosTau2\|chr15 (10944461-10943590)
	1-864, gnl\|Hg17\|chr11 (113587067-113587958)
	1-864, gnl\|Mm7\|chr9 (48667729-48666917)