Non-Coding RNA Search

Ss1.1-Lng1-LNG010013C04.5

Sequence:


               
               GGCGAAGCTCATGGCCGCACACATCACCATGAAGACCAACCCATTTGTGTGGTCCTCCTG
CAGCCGTGACTACATCACCAGCTTTCTGGACTCTGGCCTGGGGCTCTGCCTGAACAACCG
GCCCCCCAGACAGGACTTCGTGTACCCCACCGTGGCCCCTGGCCAGGCCTACGATGCAGA
TGAACAGTGCCGCTTCCAGCATGGAGTCAAATCGCGTCCAGACTTGGTGCAAATGCTTTC
CCTGGGGATGAACCATCTTTCCCACTTGGCACAAAAACTGGACAGAGCCTTCCAGGGACA
CCCTGTCTTCATTCTCTACATCCCCCACCGGCCGGTTCACAAGACCTCTTGGCCCCAATC
CTTGGCTGGACATGCTGTGAGCCTCCTGACTACTCCCCACTCTTTCTTGAGGTTTAGACT
CAGCTCCCAAAGCCCATCCACCCATAGAGACCCGTGGGAGGTGGGGGGCATTCCCAGCTC
CTCCCAGAAAGCTGGAGAACTGCTGGTTTCCCTCTTCAGCTCCCAGGGGCTCTTCTGGGG
TCTGCCCCTCCTGGGCCCACCTCCCCCAGTTCCCTAAACACACTCCCTGGCTCCTCACAG
CCTCAGCCCTGGGCACCCAGACTCAGTCCCGATCCTCCAGGCCCTCAAGACTCAAAAGAT
CAGTTTGAAGGGCTTTGTCCAAGCCAAGGCCAGGTTAACTTGAAATGAGGAGCAGGCAGC
TGTTAAAATGCCCTCTCTTCACTCCAGTGGAAGACAAGGGGACATACCTTGGATCAGCTT
CTATTTAGTGCACTCTCGCCACCCCCACCTCACCCCCTAGCTTGGCTAGTAACTAACTAC
AGCTCCCCCTAATGAATTCCTAAAGAATTCAGAAGCTACTCTTGAGCATCTGCTGTGTCC
CAGTGATCCTAATAATGACAACAGTGGCTGCCATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGAAGCTCATGGCCGCACACATCACCATGAAGACCAACCCATTTGTGTGGTCCTCCTG
CAGCCGTGACTACATCACCAGCTTTCTGGACTCTGGCCTGGGGCTCTGCCTGAACAACCG
GCCCCCCAGACAGGACTTCGTGTACCCCACCGTGGCCCCTGGCCAGGCCTACGATGCAGA
TGAACAGTGCCGCTTCCAGCATGGAGTCAAATCGCGTCCAGACTTGGTGCAAATGCTTTC
CCTGGGGATGAACCATCTTTCCCACTTGGCACAAAAACTGGACAGAGCCTTCCAGGGACA
CCCTGTCTTCATTCTCTACATCCCCCACCGGCCGGTTCACAAGACCTCTTGGCCCCAATC
CTTGGCTGGACATGCTGTGAGCCTCCTGACTACTCCCCACTCTTTCTTGAGGTTTAGACT
CAGCTCCCAAAGCCCATCCACCCATAGAGACCCGTGGGAGGTGGGGGGCATTCCCAGCTC
CTCCCAGAAAGCTGGAGAACTGCTGGTTTCCCTCTTCAGCTCCCAGGGGCTCTTCTGGGG
TCTGCCCCTCCTGGGCCCACCTCCCCCAGTTCCCTAAACACACTCCCTGGCTCCTCACAG
CCTCAGCCCTGGGCACCCAGACTCAGTCCCGATCCTCCAGGCCCTCAAGACTCAAAAGAT
CAGTTTGAAGGGCTTTGTCCAAGCCAAGGCCAGGTTAACTTGAAATGAGGAGCAGGCAGC
TGTTAAAATGCCCTCTCTTCACTCCAGTGGAAGACAAGGGGACATACCTTGGATCAGCTT
CTATTTAGTGCACTCTCGCCACCCCCACCTCACCCCCTAGCTTGGCTAGTAACTAACTAC
AGCTCCCCCTAATGAATTCCTAAAGAATTCAGAAGCTACTCTTGAGCATCTGCTGTGTCC
CAGTGATCCTAATAATGACAACAGTGGCTGCCATGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61843259|ref|XP_616651.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61843259|ref|XP_616651.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               257-562, - strand, RNAz p=0.999986

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-562, - strand, RNAz p=0.999986

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               2-124, gnl|bosTau2|chr7 (14305578-14305455)
               

               
               2-124, gnl|Hg17|chr19 (8567045-8566930)
               

               
               2-124, gnl|Mm7|chr17 (31613672-31613787)
               


               
               217-775, gnl|bosTau2|chr7 (14304855-14304304)
               

               
               217-775, gnl|Hg17|chr19 (8566295-8565811)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-124, gnl|bosTau2|chr7 (14305578-14305455)
               

               
               2-124, gnl|Hg17|chr19 (8567045-8566930)
               

               
               2-124, gnl|Mm7|chr17 (31613672-31613787)
               


               
               217-775, gnl|bosTau2|chr7 (14304855-14304304)
               

               
               217-775, gnl|Hg17|chr19 (8566295-8565811)

	2-124, gnl\|bosTau2\|chr7 (14305578-14305455)
	2-124, gnl\|Hg17\|chr19 (8567045-8566930)
	2-124, gnl\|Mm7\|chr17 (31613672-31613787)

	217-775, gnl\|bosTau2\|chr7 (14304855-14304304)
	217-775, gnl\|Hg17\|chr19 (8566295-8565811)