Ss1.1-Lng1-LNG010014E12.5
|
GCTGATATAAATGAGTAGTTTCAGCTGATGCCCACCTGAGGGGAGCCAAAACTTTGAGTT
TGGGTCAAATCAATGTAATTTTCTATTAGAATAACAATGAATAATCTTTAGACCAAGAGA
ACAGAATGCAGTTTCTACAATGTGTCATCTACATTATCTATTATACCATGAAAAATTAGT
AGGAAATGAGAAGGGACAAGAAATTATGACCCACATTCAAAAGGAAAAGCAGTCAACAGA
AACAAATTATAAAATACCCTGAATTTGGAAGTTAGACTATAAGGACTTTAAATACATGAT
TATAAATATTTGGGGACCTGAAGTAAAATATGACAGTGATGAATAGGCAGAGAGAGGATC
TCAGAAAATAAATGGAAACTATAGAAAATAACCCACTGAAAATTCTACAACTCAGCAAAA
CAATGTGTAATATTAAGAATGTGCTCGTATTTGGTAAAATCAGTGGTTACTAAGCTTGAG
GATAGGTCAAAAGAAAATATGCAATTTTAATAGAAAACAGAGAGAAGGTTGAAAATAAGT
CAGTGGATTCTCAGTTGGAGTCCATGAAAGAGAGAAGAGAAGAACTGAAAAAAAAAAATT
------------------------------------------------------------
------------------------------------------------------------
GTCCCCACATGGCCCTCCCCTGCAGGCATGCAGAGAGATATGTAGTGTCTCTTTCTTTTC
TACAAGGACACCAGCCCTATCGAATTAAGGCCTCATATGACCTCTTTTAACCTCTATTAC
ATTCTAATAGGCCCTATTTCCAAATGTTGTCAGGTAAGGAGTTAGGGCGTCAACATACAA
ATTTTGGGGAGACCCAATTTAGTCCATAACAGAGGAATAATGGTTAATTTTTTTTCCAAA
TGTGGTCGCAAACACCTACTAACAGACCACAGCAAGATAAATATAAAGAAAAAAATACCT
AGCTTTTGGCTTACGGCTCAGAGAAAGCCAAGGTGCAACTTTCTTTGTCTGGAATCCGGG
TTCATCTGACACCAGCTGCTACCACCATGCCACCTAAGTTCAACCCCAACAAGATCAAAG
TCGTATACCTGACGTGCACCAGTGGGGAAGTTGGGTGCCACATCTGCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCTGATATAAATGAGTAGTTTCAGCTGATGCCCACCTGAGGGGAGCCAAAACTTTGAGTT
TGGGTCAAATCAATGTAATTTTCTATTAGAATAACAATGAATAATCTTTAGACCAAGAGA
ACAGAATGCAGTTTCTACAATGTGTCATCTACATTATCTATTATACCATGAAAAATTAGT
AGGAAATGAGAAGGGACAAGAAATTATGACCCACATTCAAAAGGAAAAGCAGTCAACAGA
AACAAATTATAAAATACCCTGAATTTGGAAGTTAGACTATAAGGACTTTAAATACATGAT
TATAAATATTTGGGGACCTGAAGTAAAATATGACAGTGATGAATAGGCAGAGAGAGGATC
TCAGAAAATAAATGGAAACTATAGAAAATAACCCACTGAAAATTCTACAACTCAGCAAAA
CAATGTGTAATATTAAGAATGTGCTCGTATTTGGTAAAATCAGTGGTTACTAAGCTTGAG
GATAGGTCAAAAGAAAATATGCAATTTTAATAGAAAACAGAGAGAAGGTTGAAAATAAGT
CAGTGGATTCTCAGTTGGAGTCCATGAAAGAGAGAAGAGAAGAACTGAAAAAAAAAAATT
------------------------------------------------------------
------------------------------------------------------------
GTCCCCACATGGCCCTCCCCTGCAGGCATGCAGAGAGATATGTAGTGTCTCTTTCTTTTC
TACAAGGACACCAGCCCTATCGAATTAAGGCCTCATATGACCTCTTTTAACCTCTATTAC
ATTCTAATAGGCCCTATTTCCAAATGTTGTCAGGTAAGGAGTTAGGGCGTCAACATACAA
ATTTTGGGGAGACCCAATTTAGTCCATAACAGAGGAATAATGGTTAATTTTTTTTCCAAA
TGTGGTCGCAAACACCTACTAACAGACCACAGCAAGATAAATATAAAGAAAAAAATACCT
AGCTTTTGGCTTACGGCTCAGAGAAAGCCAAGGTGCAACTTTCTTTGTCTGGAATCCGGG
TTCATCTGACACCAGCTGCTACCACCATGCCACCTAAGTTCAACCCCAACAAGATCAAAG
TCGTATACCTGACGTGCACCAGTGGGGAAGTTGGGTGCCACATCTGCC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
959-1072, - strand, RNAmicro p=0.999546 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
959-1072, - strand, RNAmicro p=0.999546 |
|
893-1068, gnl|bosTau2|chr10 (58436756-58436578) |
|
893-1068, gnl|canFam2|chr1 (98394404-98394277) |
|
893-1068, gnl|danRer3|chr5 (29473784-29473629) |
|
893-1068, gnl|dasNov1|scaffold_411 (104456-104578) |
|
893-1068, gnl|echTel1|scaffold_9423 (4109-3992) |
|
893-1068, gnl|fr1|chrUn (23829017-23828869) |
|
893-1068, gnl|hg17|chr2 (85013300-85013427) |
|
893-1068, gnl|Hg17|chr2 (203880920-203881089) |
|
893-1068, gnl|loxAfr1|scaffold_57590 (7185-7303) |
|
893-1068, gnl|mm7|chr10 (128178509-128178382) |
|
893-1068, gnl|Mm7|chr10 (29480066-29479888) |
|
893-1068, gnl|monDom2|scaffold_75 (4411379-4411524) |
|
893-1068, gnl|oryCun1|scaffold_125431 (4264-4138) |
|
893-1068, gnl|panTro1|chr12 (87879443-87879570) |
|
893-1068, gnl|rheMac2|chr13 (85427627-85427754) |
|
893-1068, gnl|rn3|chr3 (145493552-145493427) |
|
893-1068, gnl|tetNig1|chrUn_random (6716856-6716724) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
893-1068, gnl|bosTau2|chr10 (58436756-58436578) |
|
893-1068, gnl|canFam2|chr1 (98394404-98394277) |
|
893-1068, gnl|danRer3|chr5 (29473784-29473629) |
|
893-1068, gnl|dasNov1|scaffold_411 (104456-104578) |
|
893-1068, gnl|echTel1|scaffold_9423 (4109-3992) |
|
893-1068, gnl|fr1|chrUn (23829017-23828869) |
|
893-1068, gnl|hg17|chr2 (85013300-85013427) |
|
893-1068, gnl|Hg17|chr2 (203880920-203881089) |
|
893-1068, gnl|loxAfr1|scaffold_57590 (7185-7303) |
|
893-1068, gnl|mm7|chr10 (128178509-128178382) |
|
893-1068, gnl|Mm7|chr10 (29480066-29479888) |
|
893-1068, gnl|monDom2|scaffold_75 (4411379-4411524) |
|
893-1068, gnl|oryCun1|scaffold_125431 (4264-4138) |
|
893-1068, gnl|panTro1|chr12 (87879443-87879570) |
|
893-1068, gnl|rheMac2|chr13 (85427627-85427754) |
|
893-1068, gnl|rn3|chr3 (145493552-145493427) |
|
893-1068, gnl|tetNig1|chrUn_random (6716856-6716724) |
