Non-Coding RNA Search

Ss1.1-Lng1-LNG010017C08.5

Sequence:


               
               GGAGACTGTCCTTCCTCTCTGGACTGTAAGAATATGTCTCCAGGGCCAGTGTCTTCTGAC
ATCGAGTCCCACCTTCAAAGTCCTGGCATCTCAATGCATCCAGGAAGCTACCTGCATTAA
AGTCAGGACTGAGGTGGGTCTGGGGCATGGCAAGGGCGGGGCAGCAGCAACAACGACCTT
GCGTGGAACCCTTGAAGGCCAGAGGGAAGGCATGGCTGGTGCGGTAGAGTCTGCTGGCAG
AGGGGGCTGACGGAGGGTGGCAGTGTCATCAGCCCAAGGCCCTGGGTGTCCCTTCTGATG
ATCCAAAGGGGCTGTAAGGGCCCTTTCTGAGGAGGTTGAGTAGGAGGGGACAAGAAGAGA
AAAAAGCGACATGAGGTGACCATCTGAACAGGGAGCCAATGTCGGAAAGAGGCACCTCTG
CAAAACTTGGCAGCAAAAGTGCTATTTATTGCCTGGGGCAAAATAAGCCAGGGTAAAAAA
AAAGCCTTCAGGTCATATGTTGCCAGAACACACCAAATGAATACGCTGTGTTCATGAGAC
TCTTAGGAAGAAGAAAGTTGACGAGGTAGATTATCTGAGAAAGTGGTCCAAGCTCACAGG
CCACAACAGGCCTTTGACCTTTGTAAGCTAAGGAAAGGCACAGGCTAAACCAGGGTGGAA
AGCCACCTGCCTCAGGCAGCATCGGGCGGGCCAGTGTTGCTGGGATCAGGGCTGGCTTGG
TGGAAGGACTGTGTGTACCAACCTCGTGGTAATAGTGGGTACGAGAAGGGGCCAGAAGAA
AACAGCTTCAGCCTCAGCCCAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGACTGTCCTTCCTCTCTGGACTGTAAGAATATGTCTCCAGGGCCAGTGTCTTCTGAC
ATCGAGTCCCACCTTCAAAGTCCTGGCATCTCAATGCATCCAGGAAGCTACCTGCATTAA
AGTCAGGACTGAGGTGGGTCTGGGGCATGGCAAGGGCGGGGCAGCAGCAACAACGACCTT
GCGTGGAACCCTTGAAGGCCAGAGGGAAGGCATGGCTGGTGCGGTAGAGTCTGCTGGCAG
AGGGGGCTGACGGAGGGTGGCAGTGTCATCAGCCCAAGGCCCTGGGTGTCCCTTCTGATG
ATCCAAAGGGGCTGTAAGGGCCCTTTCTGAGGAGGTTGAGTAGGAGGGGACAAGAAGAGA
AAAAAGCGACATGAGGTGACCATCTGAACAGGGAGCCAATGTCGGAAAGAGGCACCTCTG
CAAAACTTGGCAGCAAAAGTGCTATTTATTGCCTGGGGCAAAATAAGCCAGGGTAAAAAA
AAAGCCTTCAGGTCATATGTTGCCAGAACACACCAAATGAATACGCTGTGTTCATGAGAC
TCTTAGGAAGAAGAAAGTTGACGAGGTAGATTATCTGAGAAAGTGGTCCAAGCTCACAGG
CCACAACAGGCCTTTGACCTTTGTAAGCTAAGGAAAGGCACAGGCTAAACCAGGGTGGAA
AGCCACCTGCCTCAGGCAGCATCGGGCGGGCCAGTGTTGCTGGGATCAGGGCTGGCTTGG
TGGAAGGACTGTGTGTACCAACCTCGTGGTAATAGTGGGTACGAGAAGGGGCCAGAAGAA
AACAGCTTCAGCCTCAGCCCAGAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               42-161, - strand, RNAz p=0.962732
               

               
               190-342, + strand, RNAz p=0.999888

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-161, - strand, RNAz p=0.962732
               

               
               190-342, + strand, RNAz p=0.999888

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               62-144, + strand, RNAmicro p=0.99971
               

               
               95-165, - strand, RNAmicro p=0.980263

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               62-144, + strand, RNAmicro p=0.99971
               

               
               95-165, - strand, RNAmicro p=0.980263

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               190-342, BP435544 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP435544.1|), blast E-value=0, identity=100% 
               

               
               190-342, BW978280 full-length enriched swine cDNA library, adult intestine 
(dbj|BW978280.1|), blast E-value=0, identity=100% 
               

               
               190-342, BW979152 full-length enriched swine cDNA library, adult intestine 
(dbj|BW979152.1|), blast E-value=0, identity=100% 
               

               
               190-342, CJ016790 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|CJ016790.1|), blast E-value=0, identity=100% 
               

               
               190-342, CJ024233 full-length enriched swine cDNA library, adult trachea Sus 
(dbj|CJ024233.1|), blast E-value=0, identity=100% 
               

               
               190-342, CJ028181 full-length enriched swine cDNA library, adult trachea Sus 
(dbj|CJ028181.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               190-342, BP435544 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP435544.1|), blast E-value=0, identity=100% 
               

               
               190-342, BW978280 full-length enriched swine cDNA library, adult intestine 
(dbj|BW978280.1|), blast E-value=0, identity=100% 
               

               
               190-342, BW979152 full-length enriched swine cDNA library, adult intestine 
(dbj|BW979152.1|), blast E-value=0, identity=100% 
               

               
               190-342, CJ016790 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|CJ016790.1|), blast E-value=0, identity=100% 
               

               
               190-342, CJ024233 full-length enriched swine cDNA library, adult trachea Sus 
(dbj|CJ024233.1|), blast E-value=0, identity=100% 
               

               
               190-342, CJ028181 full-length enriched swine cDNA library, adult trachea Sus 
(dbj|CJ028181.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-804, gnl|bosTau2|chrX (17832656-17833441)
               

               
               3-804, gnl|Hg17|chrX (100447324-100446537)
               

               
               3-804, gnl|Mm7|chrX (129302353-129301574)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-804, gnl|bosTau2|chrX (17832656-17833441)
               

               
               3-804, gnl|Hg17|chrX (100447324-100446537)
               

               
               3-804, gnl|Mm7|chrX (129302353-129301574)

	42-161, - strand, RNAz p=0.962732
	190-342, + strand, RNAz p=0.999888

	62-144, + strand, RNAmicro p=0.99971
	95-165, - strand, RNAmicro p=0.980263

	190-342, BP435544 full-length enriched swine cDNA library, adult lung Sus (dbj\|BP435544.1\|), blast E-value=0, identity=100%
	190-342, BW978280 full-length enriched swine cDNA library, adult intestine (dbj\|BW978280.1\|), blast E-value=0, identity=100%
	190-342, BW979152 full-length enriched swine cDNA library, adult intestine (dbj\|BW979152.1\|), blast E-value=0, identity=100%
	190-342, CJ016790 full-length enriched swine cDNA library, adult spleen Sus (dbj\|CJ016790.1\|), blast E-value=0, identity=100%
	190-342, CJ024233 full-length enriched swine cDNA library, adult trachea Sus (dbj\|CJ024233.1\|), blast E-value=0, identity=100%
	190-342, CJ028181 full-length enriched swine cDNA library, adult trachea Sus (dbj\|CJ028181.1\|), blast E-value=0, identity=100%

	3-804, gnl\|bosTau2\|chrX (17832656-17833441)
	3-804, gnl\|Hg17\|chrX (100447324-100446537)
	3-804, gnl\|Mm7\|chrX (129302353-129301574)