Non-Coding RNA Search

Ss1.1-Lng1-LNG010020B02.5

Sequence:


               
               AGGTGCGTGTGTGTATATATATGTCAGTTTGATGTACAGAAGAAATTAACATAACATTGT
AAGTCAACTATAATAAAAAATAAAAAAATAAAGCTAAAACAAAAGAAAACACTTTAAAAA
ATTAAAAAATAATGAAATGTGCTGCCCAGGTGAGAGGCCTCTCTTGACCAGTCCTAAGGC
AGTGTTAATCTTAGTGAACCACTCTTTTGGTTGGGGAATCAGATGGGAGTGGTAACGAGT
GGCATGAACAATCAGGAATGGTTTTTAGATTCTCCCTGGACTTCTGAGGGAAAAAAATGG
TGGATTGAACATATGCATATAATTGTATTCCTTCCAGAAAGCCCATTACAACTGTAGTAG
GGCTATCCTTTTAAAGACATGGTCCTTTAAGAATAAGAAGAGTGACAAAGAAGAAAACAA
CCAAAAAATAACAATACATAGTAATGGATTGAAAGCTGGAAAGCAGGAGTTCCCATTGTG
GCTCAGGTGTATCGAACCCGCCTAGTATCCATGCAGATGCAGGTTCAATCCCTGACCCTG
CTCAGTGAGTTTAGGATCTGGCCTTGCCGTGAGCTGTGGTGTTAGAGCGGCTGCAGCTCT
TATTTGACCCTTATCCTGGGAACTTCCATATGCTGCAGATGCGGCTCTTAAAAAAAAAAA
CCAAAGAACAAAAAAAGAAAGCTGGAAAGTAAATGGAGTGTGGTAAATGACTCTGCTGAC
GTGAAAGCCAAATTTCAATTTGGCAACGAAGAAAGCCAAGAACCAACCTGATTGTTACCG
CAGATTCTTCAAATAGCTCTGGAATCAGTGGCATCAGGAACACAGTAGTAGGTCCCTCAG
TCTCCTCTTCTCCAGACCACTGAACAATTTCCTCTTCCCACCCCCACCTCTACAGTCATA
TAAGGCTGTGAGTTAATTCTCTGGGGGAGAAAACTCAGGGCTCTCCAGGCCGGGGTGTAC
CAGCCAAATTGAGACCACAGGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTGCGTGTGTGTATATATATGTCAGTTTGATGTACAGAAGAAATTAACATAACATTGT
AAGTCAACTATAATAAAAAATAAAAAAATAAAGCTAAAACAAAAGAAAACACTTTAAAAA
ATTAAAAAATAATGAAATGTGCTGCCCAGGTGAGAGGCCTCTCTTGACCAGTCCTAAGGC
AGTGTTAATCTTAGTGAACCACTCTTTTGGTTGGGGAATCAGATGGGAGTGGTAACGAGT
GGCATGAACAATCAGGAATGGTTTTTAGATTCTCCCTGGACTTCTGAGGGAAAAAAATGG
TGGATTGAACATATGCATATAATTGTATTCCTTCCAGAAAGCCCATTACAACTGTAGTAG
GGCTATCCTTTTAAAGACATGGTCCTTTAAGAATAAGAAGAGTGACAAAGAAGAAAACAA
CCAAAAAATAACAATACATAGTAATGGATTGAAAGCTGGAAAGCAGGAGTTCCCATTGTG
GCTCAGGTGTATCGAACCCGCCTAGTATCCATGCAGATGCAGGTTCAATCCCTGACCCTG
CTCAGTGAGTTTAGGATCTGGCCTTGCCGTGAGCTGTGGTGTTAGAGCGGCTGCAGCTCT
TATTTGACCCTTATCCTGGGAACTTCCATATGCTGCAGATGCGGCTCTTAAAAAAAAAAA
CCAAAGAACAAAAAAAGAAAGCTGGAAAGTAAATGGAGTGTGGTAAATGACTCTGCTGAC
GTGAAAGCCAAATTTCAATTTGGCAACGAAGAAAGCCAAGAACCAACCTGATTGTTACCG
CAGATTCTTCAAATAGCTCTGGAATCAGTGGCATCAGGAACACAGTAGTAGGTCCCTCAG
TCTCCTCTTCTCCAGACCACTGAACAATTTCCTCTTCCCACCCCCACCTCTACAGTCATA
TAAGGCTGTGAGTTAATTCTCTGGGGGAGAAAACTCAGGGCTCTCCAGGCCGGGGTGTAC
CAGCCAAATTGAGACCACAGGGTA

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               135-253, + strand, RNAz p=0.983501
               

               
               650-784, - strand, RNAz p=0.894031
               

               
               661-763, - strand, RNAz p=0.997361
               

               
               838-932, - strand, RNAz p=0.711247

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               135-253, + strand, RNAz p=0.983501
               

               
               650-784, - strand, RNAz p=0.894031
               

               
               661-763, - strand, RNAz p=0.997361
               

               
               838-932, - strand, RNAz p=0.711247

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               135-465, gnl|bosTau2|chr29 (32889768-32889436)
               

               
               135-465, gnl|Hg17|chr1 (175011769-175012097)
               


               
               650-984, gnl|bosTau2|chr29 (32889478-32889136)
               

               
               650-984, gnl|canFam2|chr7 (24370520-24369843)
               

               
               650-984, gnl|hg17|chr1 (175012031-175012733)
               

               
               650-984, gnl|Hg17|chr1 (175012034-175012397)
               

               
               650-984, gnl|mm7|chr1 (157243120-157242519)
               

               
               650-984, gnl|panTro1|chr1 (157427693-157428413)
               

               
               650-984, gnl|rheMac2|chr1 (192396616-192395839)
               

               
               650-984, gnl|rn3|chr13 (72542303-72541684)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               135-465, gnl|bosTau2|chr29 (32889768-32889436)
               

               
               135-465, gnl|Hg17|chr1 (175011769-175012097)
               


               
               650-984, gnl|bosTau2|chr29 (32889478-32889136)
               

               
               650-984, gnl|canFam2|chr7 (24370520-24369843)
               

               
               650-984, gnl|hg17|chr1 (175012031-175012733)
               

               
               650-984, gnl|Hg17|chr1 (175012034-175012397)
               

               
               650-984, gnl|mm7|chr1 (157243120-157242519)
               

               
               650-984, gnl|panTro1|chr1 (157427693-157428413)
               

               
               650-984, gnl|rheMac2|chr1 (192396616-192395839)
               

               
               650-984, gnl|rn3|chr13 (72542303-72541684)

	135-253, + strand, RNAz p=0.983501
	650-784, - strand, RNAz p=0.894031
	661-763, - strand, RNAz p=0.997361
	838-932, - strand, RNAz p=0.711247

	135-465, gnl\|bosTau2\|chr29 (32889768-32889436)
	135-465, gnl\|Hg17\|chr1 (175011769-175012097)

	650-984, gnl\|bosTau2\|chr29 (32889478-32889136)
	650-984, gnl\|canFam2\|chr7 (24370520-24369843)
	650-984, gnl\|hg17\|chr1 (175012031-175012733)
	650-984, gnl\|Hg17\|chr1 (175012034-175012397)
	650-984, gnl\|mm7\|chr1 (157243120-157242519)
	650-984, gnl\|panTro1\|chr1 (157427693-157428413)
	650-984, gnl\|rheMac2\|chr1 (192396616-192395839)
	650-984, gnl\|rn3\|chr13 (72542303-72541684)