Ss1.1-Lng1-LNG010022C03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATAGTAAGGTTCTGGAGCCTCGCGGTGGAGAGGAGAACGCTGGAATCCCCCTCTCTGGGG CTGTTCGCACCCCTGGCTATTGCTTTTCCCTTTTCTAAGTGAGAGGATATCCCCAGTCCC AGTCCCTCTCCAGAAGGACCTTCCGCCAGGGCCTCTGGTGGTCTCCTGGCTGTTCGCACC AGCTTTCAGAGGGCGACAGAAGAGCTTCCAGGCGGGCGAGGAAAAGAGGGAAAGTAGCCA GCATGTCGAACGCAATGTATAATAAGATGTGGCATCAGACCCAGGAAGACCTCGGTTCTT TGCTTGTCAAAGAAGCCGAGAAGAGGACGGAGCCGCTCGGAACCCAAGCTTTCATCTTGC AGCTGTTGGCCACCTTCTACGTCAACTACGTGCAGATCTTCAGGGACCTGGAGGATGTCT ATGACCAGATGGTCCATCCGCAGAAGCGAATCCTGATCCGAAAAATCCTGGACGGAGTGA TGGGTCGCATCCTGGAGCTGAAGCACGAGATGGTCGAGTTGGAGTTGACTGAGTTTCAGT ATTTTGATGACATCTTACAGGATCTCAAATTGGCTCCTCAGCAATTAGATATTCCCATAC CCAAGTATTTTTTGAAGGAGAAGTTGGAAGTCGTAAAAGGAAGAGAAAAAATCCTCTCTC AAATATTAGCCGACACTGGATTCAGCTTATCCGACAAGAAATACCCTATAAAGCCTATGC CCCTGGAAGAGGCAGTTAAAGTGATCCAGGTTTCCGAGAGGGCACGGCAAGGGCGCCTCC GAGCCATGTTCATGAAGCAAATCTATCTTCAAGACTGCAGAGCGAAGCAGGCCAGGTTGT CTGGCGAGAAGTTTGCAGACATGGGGGCTGCCGCGCTGCGTATCCAGAAGGTGTGGCGAG GCTTCCGTCAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATAGTAAGGTTCTGGAGCCTCGCGGTGGAGAGGAGAACGCTGGAATCCCCCTCTCTGGGG CTGTTCGCACCCCTGGCTATTGCTTTTCCCTTTTCTAAGTGAGAGGATATCCCCAGTCCC AGTCCCTCTCCAGAAGGACCTTCCGCCAGGGCCTCTGGTGGTCTCCTGGCTGTTCGCACC AGCTTTCAGAGGGCGACAGAAGAGCTTCCAGGCGGGCGAGGAAAAGAGGGAAAGTAGCCA GCATGTCGAACGCAATGTATAATAAGATGTGGCATCAGACCCAGGAAGACCTCGGTTCTT TGCTTGTCAAAGAAGCCGAGAAGAGGACGGAGCCGCTCGGAACCCAAGCTTTCATCTTGC AGCTGTTGGCCACCTTCTACGTCAACTACGTGCAGATCTTCAGGGACCTGGAGGATGTCT ATGACCAGATGGTCCATCCGCAGAAGCGAATCCTGATCCGAAAAATCCTGGACGGAGTGA TGGGTCGCATCCTGGAGCTGAAGCACGAGATGGTCGAGTTGGAGTTGACTGAGTTTCAGT ATTTTGATGACATCTTACAGGATCTCAAATTGGCTCCTCAGCAATTAGATATTCCCATAC CCAAGTATTTTTTGAAGGAGAAGTTGGAAGTCGTAAAAGGAAGAGAAAAAATCCTCTCTC AAATATTAGCCGACACTGGATTCAGCTTATCCGACAAGAAATACCCTATAAAGCCTATGC CCCTGGAAGAGGCAGTTAAAGTGATCCAGGTTTCCGAGAGGGCACGGCAAGGGCGCCTCC GAGCCATGTTCATGAAGCAAATCTATCTTCAAGACTGCAGAGCGAAGCAGGCCAGGTTGT CTGGCGAGAAGTTTGCAGACATGGGGGCTGCCGCGCTGCGTATCCAGAAGGTGTGGCGAG GCTTCCGTCAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 453-572, + strand, RNAz p=0.506701 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 453-572, + strand, RNAz p=0.506701 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 31-253, gnl|bosTau2|chr18 (39220561-39220789) | |
| 31-253, gnl|canFam2|chr25 (50298857-50299633) | |
| 31-253, gnl|hg17|chr2 (237197398-237198242) | |
| 31-253, gnl|Hg17|chr2 (237198148-237197900) | |
| 31-253, gnl|mm7|chr1 (90057563-90058288) | |
| 31-253, gnl|Mm7|chr1 (90058201-90057942) | |
| 31-253, gnl|panTro1|chr13 (128054427-128055279) | |
| 31-253, gnl|rheMac2|chr12 (100367821-100368665) | |
| 31-253, gnl|rn3|chr9 (89477471-89478205) | |
| 254-578, gnl|bosTau2|chr18 (39258588-39258912) | |
| 254-578, gnl|canFam2|chr25 (50289858-50290197) | |
| 254-578, gnl|danRer3|chr15 (17186937-17187281) | |
| 254-578, gnl|dasNov1|scaffold_27471 (40185-40526) | |
| 254-578, gnl|echTel1|scaffold_158161 (3823-3482) | |
| 254-578, gnl|fr1|chrUn (153064709-153064365) | |
| 254-578, gnl|galGal2|chr7 (4997411-4997070) | |
| 254-578, gnl|hg17|chr2 (237187802-237188143) | |
| 254-578, gnl|Hg17|chr2 (237188130-237187806) | |
| 254-578, gnl|loxAfr1|scaffold_55229 (1437-1099) | |
| 254-578, gnl|mm7|chr1 (90049594-90049935) | |
| 254-578, gnl|Mm7|chr1 (90049922-90049598) | |
| 254-578, gnl|monDom2|scaffold_161 (1165546-1165205) | |
| 254-578, gnl|oryCun1|scaffold_92138 (5477-5136) | |
| 254-578, gnl|panTro1|chr13 (128044814-128045155) | |
| 254-578, gnl|rheMac2|chr12 (100358774-100359115) | |
| 254-578, gnl|rn3|chr9 (89468655-89468996) | |
| 254-578, gnl|tetNig1|chr1 (11733086-11733422) | |
| 254-578, gnl|xenTro1|scaffold_49 (2082999-2083343) | |
| 579-682, gnl|bosTau2|chr18 (39261393-39261496) | |
| 579-682, gnl|Hg17|chr2 (237184530-237184427) | |
| 579-682, gnl|Mm7|chr1 (90047569-90047466) | |
| 697-895, gnl|bosTau2|chr18 (39266150-39266348) | |
| 697-895, gnl|Hg17|chr2 (237178836-237178638) | |
| 697-895, gnl|Mm7|chr1 (90044853-90044655) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 31-253, gnl|bosTau2|chr18 (39220561-39220789) | |
| 31-253, gnl|canFam2|chr25 (50298857-50299633) | |
| 31-253, gnl|hg17|chr2 (237197398-237198242) | |
| 31-253, gnl|Hg17|chr2 (237198148-237197900) | |
| 31-253, gnl|mm7|chr1 (90057563-90058288) | |
| 31-253, gnl|Mm7|chr1 (90058201-90057942) | |
| 31-253, gnl|panTro1|chr13 (128054427-128055279) | |
| 31-253, gnl|rheMac2|chr12 (100367821-100368665) | |
| 31-253, gnl|rn3|chr9 (89477471-89478205) | |
| 254-578, gnl|bosTau2|chr18 (39258588-39258912) | |
| 254-578, gnl|canFam2|chr25 (50289858-50290197) | |
| 254-578, gnl|danRer3|chr15 (17186937-17187281) | |
| 254-578, gnl|dasNov1|scaffold_27471 (40185-40526) | |
| 254-578, gnl|echTel1|scaffold_158161 (3823-3482) | |
| 254-578, gnl|fr1|chrUn (153064709-153064365) | |
| 254-578, gnl|galGal2|chr7 (4997411-4997070) | |
| 254-578, gnl|hg17|chr2 (237187802-237188143) | |
| 254-578, gnl|Hg17|chr2 (237188130-237187806) | |
| 254-578, gnl|loxAfr1|scaffold_55229 (1437-1099) | |
| 254-578, gnl|mm7|chr1 (90049594-90049935) | |
| 254-578, gnl|Mm7|chr1 (90049922-90049598) | |
| 254-578, gnl|monDom2|scaffold_161 (1165546-1165205) | |
| 254-578, gnl|oryCun1|scaffold_92138 (5477-5136) | |
| 254-578, gnl|panTro1|chr13 (128044814-128045155) | |
| 254-578, gnl|rheMac2|chr12 (100358774-100359115) | |
| 254-578, gnl|rn3|chr9 (89468655-89468996) | |
| 254-578, gnl|tetNig1|chr1 (11733086-11733422) | |
| 254-578, gnl|xenTro1|scaffold_49 (2082999-2083343) | |
| 579-682, gnl|bosTau2|chr18 (39261393-39261496) | |
| 579-682, gnl|Hg17|chr2 (237184530-237184427) | |
| 579-682, gnl|Mm7|chr1 (90047569-90047466) | |
| 697-895, gnl|bosTau2|chr18 (39266150-39266348) | |
| 697-895, gnl|Hg17|chr2 (237178836-237178638) | |
| 697-895, gnl|Mm7|chr1 (90044853-90044655) |