Non-Coding RNA Search

Ss1.1-Lng1-LNG010027E10.5

Sequence:


               
               TATCAGTTTAATGGTCTGGGGCAGTTGATTTGACTTTTTCTTGAAATAAATCAACAACAA
AAAAAGAACTTCACTCTCTCTTATTTGTTGCCTAAACAATGTTTCCAAAAGTTAATTGAC
TGTCTCCAGTACAGCTGATTTGATTGTCTCAAGAAATCAGTTAGTTTTGCTAAAAAACAG
ATATAACTCCTCTACCTCTTGTCTGGTGCTTATACAATGTTTCCAGAAGATCATTATCCT
TCAGCATGCTATCAGTATGGAGAAGGCCCATTTTTTTTAAAAAAAGATAATGCTCCCTCT
CTTTCGTGAATTTCAGCCTATTTAGACTTGGTTCTTATGCCTCACATTGAATACTTGTTC
TAGAGAAATGTGATCCCAGGAATGCTGGTGGTTTGCTGTGTGTTAAAATGGTGCTATGCT
TTAGGTTTCTGTTCCAATCTAAGATTTCAGAAGAGTCAGTAACTGCAAATAATCTAAAAG
GGGAAGAGTGAAGAATGCTTCTAACTTCCCTTTGAAATGAATAGCTCTGCCAGAGCAGCA
GCTATTAGAAAAACAAAAACGACAAAGAAAAGCTGCTCGGCTCAGCACACAGAGGTAAAT
TTACTTACATCAGACTGAAAAATGAGGGCTGGGCTTTGAAAAGACATCCCTTCTGACTAG
AGGAGAGCTTGTAATTTTGGCATGGCTGCAGCCCTCCTAAACCCCTGAGAAATTCTGAAA
AACATTACAGAAGACTGTTCTTAATATTAATGGATGTCTTCGCGTGCGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTTTGTGTATCTATGCATTCGGAAAGAAAAATGCCAGCCAGAGAA
GAGGGGAAGAATGAGAGAAGAACGGATTATGTAGGTTGAAGATCTACCACTGAAAATGTC
TAATTTCTGACGAATCATTGGCATTCGTCATTCTCTACTCTTCAGCCAATAGAGTAGCTC
AAGATGAGATTGAGAGGAACACCCGCCATTCAGACACTCTTAAGTTATTAGCCTTCCAAT
AATGCGGCCCTCTTAACAAACTCTTCCTAAAATACTTTGTTTGTAGATAACACAGCTCAC
TGATATAATCTAAGATCATGGTCTTATCTATTATATGACATCAGAGGTGAAAAAAAGACC
GTTTTCCCATGGCTAATTGTGGCAAGTGTGGCATCATGTTGTACTCTTAGTGAACAATTT
CAGGGCCACCAAGAGCCTACTGCTCTGCCTCTTGGGAGGGGACTTTTCCTTTGCAGCTCA
GCTTCAGGAAACACGAACATTTGTGTTTTCGAGACCACATACCATTGGGAAGGAAGTTGG
GGTGGAGATGCGTGCTGAGATTAAGTGGCTACGAGAATCCCTGGACTGTGTCTGATCTGG
AAACCACTAGGGCTTGTGCAGTCCTCTTTCTGGCATGCCTTTAGAACTTGCCAAGTGCAC
AACAGGGCCACTAAGGATATTGTTCACCAAATAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCAGTTTAATGGTCTGGGGCAGTTGATTTGACTTTTTCTTGAAATAAATCAACAACAA
AAAAAGAACTTCACTCTCTCTTATTTGTTGCCTAAACAATGTTTCCAAAAGTTAATTGAC
TGTCTCCAGTACAGCTGATTTGATTGTCTCAAGAAATCAGTTAGTTTTGCTAAAAAACAG
ATATAACTCCTCTACCTCTTGTCTGGTGCTTATACAATGTTTCCAGAAGATCATTATCCT
TCAGCATGCTATCAGTATGGAGAAGGCCCATTTTTTTTAAAAAAAGATAATGCTCCCTCT
CTTTCGTGAATTTCAGCCTATTTAGACTTGGTTCTTATGCCTCACATTGAATACTTGTTC
TAGAGAAATGTGATCCCAGGAATGCTGGTGGTTTGCTGTGTGTTAAAATGGTGCTATGCT
TTAGGTTTCTGTTCCAATCTAAGATTTCAGAAGAGTCAGTAACTGCAAATAATCTAAAAG
GGGAAGAGTGAAGAATGCTTCTAACTTCCCTTTGAAATGAATAGCTCTGCCAGAGCAGCA
GCTATTAGAAAAACAAAAACGACAAAGAAAAGCTGCTCGGCTCAGCACACAGAGGTAAAT
TTACTTACATCAGACTGAAAAATGAGGGCTGGGCTTTGAAAAGACATCCCTTCTGACTAG
AGGAGAGCTTGTAATTTTGGCATGGCTGCAGCCCTCCTAAACCCCTGAGAAATTCTGAAA
AACATTACAGAAGACTGTTCTTAATATTAATGGATGTCTTCGCGTGCGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTTTGTGTATCTATGCATTCGGAAAGAAAAATGCCAGCCAGAGAA
GAGGGGAAGAATGAGAGAAGAACGGATTATGTAGGTTGAAGATCTACCACTGAAAATGTC
TAATTTCTGACGAATCATTGGCATTCGTCATTCTCTACTCTTCAGCCAATAGAGTAGCTC
AAGATGAGATTGAGAGGAACACCCGCCATTCAGACACTCTTAAGTTATTAGCCTTCCAAT
AATGCGGCCCTCTTAACAAACTCTTCCTAAAATACTTTGTTTGTAGATAACACAGCTCAC
TGATATAATCTAAGATCATGGTCTTATCTATTATATGACATCAGAGGTGAAAAAAAGACC
GTTTTCCCATGGCTAATTGTGGCAAGTGTGGCATCATGTTGTACTCTTAGTGAACAATTT
CAGGGCCACCAAGAGCCTACTGCTCTGCCTCTTGGGAGGGGACTTTTCCTTTGCAGCTCA
GCTTCAGGAAACACGAACATTTGTGTTTTCGAGACCACATACCATTGGGAAGGAAGTTGG
GGTGGAGATGCGTGCTGAGATTAAGTGGCTACGAGAATCCCTGGACTGTGTCTGATCTGG
AAACCACTAGGGCTTGTGCAGTCCTCTTTCTGGCATGCCTTTAGAACTTGCCAAGTGCAC
AACAGGGCCACTAAGGATATTGTTCACCAAATAACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               459-616, - strand, RNAz p=0.993423

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               459-616, - strand, RNAz p=0.993423

Similar Transcript(s): 4 entry(ies)

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Similar Transcript(s): 4 entry(ies)

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               459-616, BP433726 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP433726.1|), blast E-value=0, identity=100% 
               

               
               459-616, BP440606 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP440606.1|), blast E-value=0, identity=100% 
               

               
               466-616, CJ025854 full-length enriched swine cDNA library, adult trachea Sus 
(dbj|CJ025854.1|), blast E-value=0, identity=100% 
               

               
               459-616, CJ026003 full-length enriched swine cDNA library, adult trachea Sus 
(dbj|CJ026003.1|), blast E-value=0, identity=100%

Similar Transcript(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               459-616, BP433726 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP433726.1|), blast E-value=0, identity=100% 
               

               
               459-616, BP440606 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP440606.1|), blast E-value=0, identity=100% 
               

               
               466-616, CJ025854 full-length enriched swine cDNA library, adult trachea Sus 
(dbj|CJ025854.1|), blast E-value=0, identity=100% 
               

               
               459-616, CJ026003 full-length enriched swine cDNA library, adult trachea Sus 
(dbj|CJ026003.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1436, gnl|bosTau2|chr6 (66893526-66892119)
               

               
               1-1436, gnl|Hg17|chr9 (14265059-14263652)
               

               
               1-1436, gnl|Mm7|chr4 (81871769-81870502)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1436, gnl|bosTau2|chr6 (66893526-66892119)
               

               
               1-1436, gnl|Hg17|chr9 (14265059-14263652)
               

               
               1-1436, gnl|Mm7|chr4 (81871769-81870502)

	459-616, BP433726 full-length enriched swine cDNA library, adult lung Sus (dbj\|BP433726.1\|), blast E-value=0, identity=100%
	459-616, BP440606 full-length enriched swine cDNA library, adult lung Sus (dbj\|BP440606.1\|), blast E-value=0, identity=100%
	466-616, CJ025854 full-length enriched swine cDNA library, adult trachea Sus (dbj\|CJ025854.1\|), blast E-value=0, identity=100%
	459-616, CJ026003 full-length enriched swine cDNA library, adult trachea Sus (dbj\|CJ026003.1\|), blast E-value=0, identity=100%

	1-1436, gnl\|bosTau2\|chr6 (66893526-66892119)
	1-1436, gnl\|Hg17\|chr9 (14265059-14263652)
	1-1436, gnl\|Mm7\|chr4 (81871769-81870502)