Ss1.1-Lng1-LNG010028C03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTTCTTTTTTCTTCAGACAGCTTCGCGGAGCACGGAGTCAGCGGCTGCCCTGTGGGGC TCTCCGCTGTTGGCGCGCCTCTGTGTGTGGCTCCCCCAGGCACACCTCTGTCGACGATGA GGAAAGGTCTGCGGGCGACAGCGGCCCGCTGCGGACTGGGACTGGGATACGTGCTGCAAA TGCTTGTGCTACCTGCCCTGGCCCTGCTCAGCGCCAGCGGCACCGGCTCGGCCGCTCAAG ACGACGACTTTTTTCATGAACTCCCAGAAACCTTTCCATCCGATCCACCTGAGCCTCTGC CACATTTCCTTATTGAGCCTGAAGAAGCTTATATTGTGAAGAATAAGCCTGTGAACCTGT ACTGTAAAGCCAGCCCTGCCACCCAGATCTACTTCAAGTGCAACAGTGAATGGGTTCATC AGAAGGACCACATAGTAGACGAACGAGTAGATGAAACCTCTGGTCTCATTGTCCGAGAAG TGAGCATCGAGATTTCCCGCCAGCAAGTGGAAGAACTCTTTGGGCCCGAAGATTACTGGT GTCAGTGTGTGGCCTGGAGCTCGGCGGGCACCACCAAGAGTCGGAAGGCCTACGTGCGCA TCGCATATCTGCGAAAGACATTTGAGCAGGAACCCCTGGGAAAGGAAGTATCCTTGGAAC AGGAAGTCTTGCTCCAGTGTCGACCGCCTGAAGGGATCCCAGTGGCTGAAGTGGAATGGT TGAAAAATGAAGACATCATTGATCCCGTGGAAGATCGGAATTTTTATATTACTATTGATC ACAACCTCATCATAAAGCAGGCCCGCCTCTCAGATACTGCAAACTATACTTGCGTTGCCA AAAACATTGTTGCCAAGAGAAAAAGCACAACCGCAACTGTCATAGTCTATGTAAATGGTG GCTGGTCCACCTGGACAGAGTGGTCTGTGTGTAATAGCCGCTGTGGACGAGGGTATCAGA AGCGCACAAGGACCTGCACCAATCCAGCCCCACTCAATGGTGGTGCCTTCTGTGAAGGGC AGAGTGTGCAGAAAATAGCCTGTACCACGTTGTGCCCAGTGGATGGCAGATGGACCTCAT GGAGTAAGTGGTCGACCTGCGGGACCGAGTGCACACACTGGCGCAGAAGGGAGTGCACAG CACCAGCCCCCAAGAATGGAGGCAAGGACTGCGATGGCCTCGTCTTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTTCTTTTTTCTTCAGACAGCTTCGCGGAGCACGGAGTCAGCGGCTGCCCTGTGGGGC TCTCCGCTGTTGGCGCGCCTCTGTGTGTGGCTCCCCCAGGCACACCTCTGTCGACGATGA GGAAAGGTCTGCGGGCGACAGCGGCCCGCTGCGGACTGGGACTGGGATACGTGCTGCAAA TGCTTGTGCTACCTGCCCTGGCCCTGCTCAGCGCCAGCGGCACCGGCTCGGCCGCTCAAG ACGACGACTTTTTTCATGAACTCCCAGAAACCTTTCCATCCGATCCACCTGAGCCTCTGC CACATTTCCTTATTGAGCCTGAAGAAGCTTATATTGTGAAGAATAAGCCTGTGAACCTGT ACTGTAAAGCCAGCCCTGCCACCCAGATCTACTTCAAGTGCAACAGTGAATGGGTTCATC AGAAGGACCACATAGTAGACGAACGAGTAGATGAAACCTCTGGTCTCATTGTCCGAGAAG TGAGCATCGAGATTTCCCGCCAGCAAGTGGAAGAACTCTTTGGGCCCGAAGATTACTGGT GTCAGTGTGTGGCCTGGAGCTCGGCGGGCACCACCAAGAGTCGGAAGGCCTACGTGCGCA TCGCATATCTGCGAAAGACATTTGAGCAGGAACCCCTGGGAAAGGAAGTATCCTTGGAAC AGGAAGTCTTGCTCCAGTGTCGACCGCCTGAAGGGATCCCAGTGGCTGAAGTGGAATGGT TGAAAAATGAAGACATCATTGATCCCGTGGAAGATCGGAATTTTTATATTACTATTGATC ACAACCTCATCATAAAGCAGGCCCGCCTCTCAGATACTGCAAACTATACTTGCGTTGCCA AAAACATTGTTGCCAAGAGAAAAAGCACAACCGCAACTGTCATAGTCTATGTAAATGGTG GCTGGTCCACCTGGACAGAGTGGTCTGTGTGTAATAGCCGCTGTGGACGAGGGTATCAGA AGCGCACAAGGACCTGCACCAATCCAGCCCCACTCAATGGTGGTGCCTTCTGTGAAGGGC AGAGTGTGCAGAAAATAGCCTGTACCACGTTGTGCCCAGTGGATGGCAGATGGACCTCAT GGAGTAAGTGGTCGACCTGCGGGACCGAGTGCACACACTGGCGCAGAAGGGAGTGCACAG CACCAGCCCCCAAGAATGGAGGCAAGGACTGCGATGGCCTCGTCTTAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 595-1184, + strand, RNAz p=0.940155 | |
| 595-695, + strand, RNAz p=0.98609 | |
| 926-1045, - strand, RNAz p=0.894849 | |
| 928-1045, - strand, RNAz p=0.594853 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 595-1184, + strand, RNAz p=0.940155 | |
| 595-695, + strand, RNAz p=0.98609 | |
| 926-1045, - strand, RNAz p=0.894849 | |
| 928-1045, - strand, RNAz p=0.594853 |
| Aligned organism(s): 95 entry(ies) | More info |
| Aligned organism(s): 95 entry(ies) | Help | Less info |
| 239-464, gnl|bosTau2|chr6 (11956641-11956866) | |
| 239-464, gnl|canFam2|chr32 (21099553-21099819) | |
| 239-464, gnl|danRer3|chr13 (29959444-29959178) | |
| 239-464, gnl|dasNov1|scaffold_90746 (1477-1749) | |
| 239-464, gnl|echTel1|scaffold_293646 (437-178) | |
| 239-464, gnl|fr1|chrUn (118381895-118382157) | |
| 239-464, gnl|galGal2|chr4 (59195981-59196236) | |
| 239-464, gnl|hg17|chr4 (96613716-96613985) | |
| 239-464, gnl|Hg17|chr4 (96613962-96613737) | |
| 239-464, gnl|loxAfr1|scaffold_100612 (4964-4720) | |
| 239-464, gnl|mm7|chr3 (141572771-141572513) | |
| 239-464, gnl|Mm7|chr3 (141572534-141572759) | |
| 239-464, gnl|monDom2|scaffold_32 (25062588-25062333) | |
| 239-464, gnl|oryCun1|scaffold_132013 (8334-8059) | |
| 239-464, gnl|panTro1|chr3 (112904989-112905258) | |
| 239-464, gnl|rheMac2|chr5 (88292643-88292912) | |
| 239-464, gnl|rn3|chr2 (239555521-239555263) | |
| 239-464, gnl|tetNig1|chr4 (2028632-2028894) | |
| 239-464, gnl|xenTro1|scaffold_222 (784867-785145) | |
| 258-431, gnl|bosTau2|chr28 (21769891-21769718) | |
| 258-431, gnl|canFam2|chr4 (25274130-25274259) | |
| 258-431, gnl|danRer3|chr13 (29959213-29959342) | |
| 258-431, gnl|dasNov1|scaffold_252478 (3796-3667) | |
| 258-431, gnl|echTel1|scaffold_293646 (212-334) | |
| 258-431, gnl|fr1|chrUn (213527562-213527432) | |
| 258-431, gnl|galGal2|chr6 (11044933-11045062) | |
| 258-431, gnl|hg17|chr10 (72709601-72709730) | |
| 258-431, gnl|Hg17|chr10 (72709604-72709777) | |
| 258-431, gnl|loxAfr1|scaffold_100612 (4751-4880) | |
| 258-431, gnl|mm7|chr10 (60301462-60301333) | |
| 258-431, gnl|Mm7|chr10 (60301457-60301284) | |
| 258-431, gnl|monDom2|scaffold_41 (487683-487556) | |
| 258-431, gnl|oryCun1|scaffold_160741 (7028-6904) | |
| 258-431, gnl|panTro1|chr8 (73932073-73932202) | |
| 258-431, gnl|rheMac2|chr9 (65723642-65723513) | |
| 258-431, gnl|rn3|chr20 (28128716-28128587) | |
| 258-431, gnl|tetNig1|chr17 (3056902-3057031) | |
| 258-431, gnl|xenTro1|scaffold_459 (86645-86516) | |
| 595-713, gnl|bosTau2|chr6 (12067329-12067447) | |
| 595-713, gnl|canFam2|chr32 (21051055-21051190) | |
| 595-713, gnl|danRer3|chr13 (29961991-29961857) | |
| 595-713, gnl|dasNov1|scaffold_15227 (13840-13706) | |
| 595-713, gnl|echTel1|scaffold_299224 (4232-4362) | |
| 595-713, gnl|fr1|chrUn (118366551-118366680) | |
| 595-713, gnl|galGal2|chr4 (59164102-59164217) | |
| 595-713, gnl|hg17|chr4 (96556581-96556716) | |
| 595-713, gnl|Hg17|chr4 (96556703-96556585) | |
| 595-713, gnl|loxAfr1|scaffold_79131 (2069-1934) | |
| 595-713, gnl|mm7|chr3 (141628429-141628298) | |
| 595-713, gnl|Mm7|chr3 (141628309-141628426) | |
| 595-713, gnl|monDom2|scaffold_32 (25116995-25116859) | |
| 595-713, gnl|oryCun1|scaffold_212080 (91608-91480) | |
| 595-713, gnl|panTro1|chr3 (112848338-112848473) | |
| 595-713, gnl|rheMac2|chr5 (88237096-88237231) | |
| 595-713, gnl|rn3|chr2 (239609193-239609062) | |
| 595-713, gnl|tetNig1|chr4 (2020338-2020474) | |
| 595-713, gnl|xenTro1|scaffold_222 (759747-759883) | |
| 886-1045, gnl|bosTau2|chr27 (20575337-20575496) | |
| 886-1045, gnl|canFam2|chr16 (32261671-32261536) | |
| 886-1045, gnl|danRer3|chr5 (21091631-21091498) | |
| 886-1045, gnl|dasNov1|scaffold_621 (4047-3912) | |
| 886-1045, gnl|echTel1|scaffold_230869 (1824-1691) | |
| 886-1045, gnl|fr1|chrUn (80301207-80301075) | |
| 886-1045, gnl|galGal2|chrUn (8800275-8800140) | |
| 886-1045, gnl|hg17|chr8 (35661630-35661765) | |
| 886-1045, gnl|Hg17|chr8 (35661636-35661795) | |
| 886-1045, gnl|loxAfr1|scaffold_728 (83100-83224) | |
| 886-1045, gnl|mm7|chr8 (27512297-27512162) | |
| 886-1045, gnl|Mm7|chr8 (27512289-27512130) | |
| 886-1045, gnl|monDom2|scaffold_32 (25143145-25143280) | |
| 886-1045, gnl|oryCun1|scaffold_200489 (123083-122948) | |
| 886-1045, gnl|panTro1|chr7 (36873313-36873448) | |
| 886-1045, gnl|rheMac2|chr8 (36050839-36050974) | |
| 886-1045, gnl|rn3|chr16 (67558713-67558848) | |
| 886-1045, gnl|tetNig1|chrUn_random (2043851-2043719) | |
| 886-1045, gnl|xenTro1|scaffold_222 (750159-750024) | |
| 1057-1184, gnl|bosTau2|chr6 (12120667-12120794) | |
| 1057-1184, gnl|canFam2|chr32 (21015498-21015705) | |
| 1057-1184, gnl|danRer3|chrUn (124313753-124313949) | |
| 1057-1184, gnl|dasNov1|scaffold_44321 (6899-7091) | |
| 1057-1184, gnl|echTel1|scaffold_256309 (4875-5072) | |
| 1057-1184, gnl|fr1|chrUn (118348859-118349053) | |
| 1057-1184, gnl|galGal2|chr4 (59149790-59149982) | |
| 1057-1184, gnl|hg17|chr4 (96520753-96520946) | |
| 1057-1184, gnl|Hg17|chr4 (96520925-96520798) | |
| 1057-1184, gnl|loxAfr1|scaffold_728 (86114-85922) | |
| 1057-1184, gnl|mm7|chr3 (141665264-141665071) | |
| 1057-1184, gnl|Mm7|chr3 (141665091-141665217) | |
| 1057-1184, gnl|monDom2|scaffold_32 (25149546-25149337) | |
| 1057-1184, gnl|oryCun1|scaffold_212080 (132439-132247) | |
| 1057-1184, gnl|panTro1|chr3 (112813126-112813319) | |
| 1057-1184, gnl|rheMac2|chr5 (88202167-88202360) | |
| 1057-1184, gnl|rn3|chr2 (239642763-239642570) | |
| 1057-1184, gnl|tetNig1|chr4 (2009167-2009363) | |
| 1057-1184, gnl|xenTro1|scaffold_222 (748973-749169) |
| Aligned organism(s): 95 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 239-464, gnl|bosTau2|chr6 (11956641-11956866) | |
| 239-464, gnl|canFam2|chr32 (21099553-21099819) | |
| 239-464, gnl|danRer3|chr13 (29959444-29959178) | |
| 239-464, gnl|dasNov1|scaffold_90746 (1477-1749) | |
| 239-464, gnl|echTel1|scaffold_293646 (437-178) | |
| 239-464, gnl|fr1|chrUn (118381895-118382157) | |
| 239-464, gnl|galGal2|chr4 (59195981-59196236) | |
| 239-464, gnl|hg17|chr4 (96613716-96613985) | |
| 239-464, gnl|Hg17|chr4 (96613962-96613737) | |
| 239-464, gnl|loxAfr1|scaffold_100612 (4964-4720) | |
| 239-464, gnl|mm7|chr3 (141572771-141572513) | |
| 239-464, gnl|Mm7|chr3 (141572534-141572759) | |
| 239-464, gnl|monDom2|scaffold_32 (25062588-25062333) | |
| 239-464, gnl|oryCun1|scaffold_132013 (8334-8059) | |
| 239-464, gnl|panTro1|chr3 (112904989-112905258) | |
| 239-464, gnl|rheMac2|chr5 (88292643-88292912) | |
| 239-464, gnl|rn3|chr2 (239555521-239555263) | |
| 239-464, gnl|tetNig1|chr4 (2028632-2028894) | |
| 239-464, gnl|xenTro1|scaffold_222 (784867-785145) | |
| 258-431, gnl|bosTau2|chr28 (21769891-21769718) | |
| 258-431, gnl|canFam2|chr4 (25274130-25274259) | |
| 258-431, gnl|danRer3|chr13 (29959213-29959342) | |
| 258-431, gnl|dasNov1|scaffold_252478 (3796-3667) | |
| 258-431, gnl|echTel1|scaffold_293646 (212-334) | |
| 258-431, gnl|fr1|chrUn (213527562-213527432) | |
| 258-431, gnl|galGal2|chr6 (11044933-11045062) | |
| 258-431, gnl|hg17|chr10 (72709601-72709730) | |
| 258-431, gnl|Hg17|chr10 (72709604-72709777) | |
| 258-431, gnl|loxAfr1|scaffold_100612 (4751-4880) | |
| 258-431, gnl|mm7|chr10 (60301462-60301333) | |
| 258-431, gnl|Mm7|chr10 (60301457-60301284) | |
| 258-431, gnl|monDom2|scaffold_41 (487683-487556) | |
| 258-431, gnl|oryCun1|scaffold_160741 (7028-6904) | |
| 258-431, gnl|panTro1|chr8 (73932073-73932202) | |
| 258-431, gnl|rheMac2|chr9 (65723642-65723513) | |
| 258-431, gnl|rn3|chr20 (28128716-28128587) | |
| 258-431, gnl|tetNig1|chr17 (3056902-3057031) | |
| 258-431, gnl|xenTro1|scaffold_459 (86645-86516) | |
| 595-713, gnl|bosTau2|chr6 (12067329-12067447) | |
| 595-713, gnl|canFam2|chr32 (21051055-21051190) | |
| 595-713, gnl|danRer3|chr13 (29961991-29961857) | |
| 595-713, gnl|dasNov1|scaffold_15227 (13840-13706) | |
| 595-713, gnl|echTel1|scaffold_299224 (4232-4362) | |
| 595-713, gnl|fr1|chrUn (118366551-118366680) | |
| 595-713, gnl|galGal2|chr4 (59164102-59164217) | |
| 595-713, gnl|hg17|chr4 (96556581-96556716) | |
| 595-713, gnl|Hg17|chr4 (96556703-96556585) | |
| 595-713, gnl|loxAfr1|scaffold_79131 (2069-1934) | |
| 595-713, gnl|mm7|chr3 (141628429-141628298) | |
| 595-713, gnl|Mm7|chr3 (141628309-141628426) | |
| 595-713, gnl|monDom2|scaffold_32 (25116995-25116859) | |
| 595-713, gnl|oryCun1|scaffold_212080 (91608-91480) | |
| 595-713, gnl|panTro1|chr3 (112848338-112848473) | |
| 595-713, gnl|rheMac2|chr5 (88237096-88237231) | |
| 595-713, gnl|rn3|chr2 (239609193-239609062) | |
| 595-713, gnl|tetNig1|chr4 (2020338-2020474) | |
| 595-713, gnl|xenTro1|scaffold_222 (759747-759883) | |
| 886-1045, gnl|bosTau2|chr27 (20575337-20575496) | |
| 886-1045, gnl|canFam2|chr16 (32261671-32261536) | |
| 886-1045, gnl|danRer3|chr5 (21091631-21091498) | |
| 886-1045, gnl|dasNov1|scaffold_621 (4047-3912) | |
| 886-1045, gnl|echTel1|scaffold_230869 (1824-1691) | |
| 886-1045, gnl|fr1|chrUn (80301207-80301075) | |
| 886-1045, gnl|galGal2|chrUn (8800275-8800140) | |
| 886-1045, gnl|hg17|chr8 (35661630-35661765) | |
| 886-1045, gnl|Hg17|chr8 (35661636-35661795) | |
| 886-1045, gnl|loxAfr1|scaffold_728 (83100-83224) | |
| 886-1045, gnl|mm7|chr8 (27512297-27512162) | |
| 886-1045, gnl|Mm7|chr8 (27512289-27512130) | |
| 886-1045, gnl|monDom2|scaffold_32 (25143145-25143280) | |
| 886-1045, gnl|oryCun1|scaffold_200489 (123083-122948) | |
| 886-1045, gnl|panTro1|chr7 (36873313-36873448) | |
| 886-1045, gnl|rheMac2|chr8 (36050839-36050974) | |
| 886-1045, gnl|rn3|chr16 (67558713-67558848) | |
| 886-1045, gnl|tetNig1|chrUn_random (2043851-2043719) | |
| 886-1045, gnl|xenTro1|scaffold_222 (750159-750024) | |
| 1057-1184, gnl|bosTau2|chr6 (12120667-12120794) | |
| 1057-1184, gnl|canFam2|chr32 (21015498-21015705) | |
| 1057-1184, gnl|danRer3|chrUn (124313753-124313949) | |
| 1057-1184, gnl|dasNov1|scaffold_44321 (6899-7091) | |
| 1057-1184, gnl|echTel1|scaffold_256309 (4875-5072) | |
| 1057-1184, gnl|fr1|chrUn (118348859-118349053) | |
| 1057-1184, gnl|galGal2|chr4 (59149790-59149982) | |
| 1057-1184, gnl|hg17|chr4 (96520753-96520946) | |
| 1057-1184, gnl|Hg17|chr4 (96520925-96520798) | |
| 1057-1184, gnl|loxAfr1|scaffold_728 (86114-85922) | |
| 1057-1184, gnl|mm7|chr3 (141665264-141665071) | |
| 1057-1184, gnl|Mm7|chr3 (141665091-141665217) | |
| 1057-1184, gnl|monDom2|scaffold_32 (25149546-25149337) | |
| 1057-1184, gnl|oryCun1|scaffold_212080 (132439-132247) | |
| 1057-1184, gnl|panTro1|chr3 (112813126-112813319) | |
| 1057-1184, gnl|rheMac2|chr5 (88202167-88202360) | |
| 1057-1184, gnl|rn3|chr2 (239642763-239642570) | |
| 1057-1184, gnl|tetNig1|chr4 (2009167-2009363) | |
| 1057-1184, gnl|xenTro1|scaffold_222 (748973-749169) |