Non-Coding RNA Search

Ss1.1-Lng1-LNG010029E04.5

Sequence:


               
               GCGGCCGCTGACCCTGGATGCAGTGGAGAATGATGGCTCTGTGTGCCCAAGGTTAGTTGG
TCCTCGTGCGACAATGAGAAGTGGAGCGGAGAAAACCCCGCCCACCCCTTTATCCTGATG
TCTTTCCTGACCCTTCCTTCCTTGTCCCCCACTCTTTCCTGCTGGCCTTTCCAGGTGAGC
TCCAAAGTCCGTTCCCTCTTCAGGGAGAAGGTTATACTGAGACTCCGACTGAGTAGTCAC
CCCCCTGCCCTCATTTCCCCCTGTATTGCCTAAGTCTGGCGCAGGCTCTAGATTCAGGGA
TACTCACCTCTCAGGGGGCCCCTCAGAGCCTCCTGTCTCGGTTTCTCCACCTGTGAGATG
GTGAGTCATCTGGTTGAGGGGGCGTAAAGCATGAGGGAATCAGAAGCCCACTTGTGCAGA
CTCAGAGCTTGGACTCTCCTCCCACCGAGGGCGAGAACGAAACAGCTTTTCACATAAGCT
ATTGCCCTGCCCACACCGATGACCAGGAGCTCGGGGAGGAGGTTGAGGGGAGGGACTAGA
GTTAGACTATGTGAGGTGCTGCTGGGAGCTCAGTCTCCACATTGACCTCCCACCATGCAG
AGGTGGCTCGGGCTTCCCCTGCATCCCAAAGCCAGACTGCAGCCCCTGGGGGGGTGGTTC
CAGCTGCTGCTGCTCTCTTCCCCCACTTTACTTTCCAGGGTAGTGTTCGAGACTCAGGCT
GGGCCTGTGCAGGCAGGGAATTCTGCACCCTCACCCCCACCACCCCTCAACAACCAGAAG
GGCTGGGTTATGGGATGGGATCCCTTTGGGGCATCAGGCAGTATAAACCTGCCACTCTCA
GCTCACGATCTAATCCCACTCTGGTGTGGTTCAGCCTGGGCCCAGTCTCCCTGGCTGAAG
GAGCCCAGGTACAGGGGTTATAGGAAGCTGTTTGTTCTGTTTGGAGTTGGGCAGGGAGCT
GGGTCCTAGTCTCCATTTATGAGAAACAGATTTGGGGAGAGTAGATCATTGAAGCCACCC
GTCTTCGGCCTAAGCTGGATGTGTGTGTGGGATTGTGGTAGAGGGGGTGGTGTGGAGCAG
ACTGAGTCTACTCATAGGCTGCAACAAAGGTTGCTCTGTCCCTGGACATTGCGTCCATCC
TATCTTCCCCTCCTTGCTTCGCTGGCCACAGTGTCTCCCTCCCGCCTTGAGTATGTATGT
GGCTCTGCCATCCTCACTCATGATGGAGCAGAAGTGAGGAGTTGCAGCCTGGGAACACAG
AGACAGGCAGAAGACCAGGACCAGGCCCGGAGCGCACAGGGCTCTGTCTGAGCACCCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTGACCCTGGATGCAGTGGAGAATGATGGCTCTGTGTGCCCAAGGTTAGTTGG
TCCTCGTGCGACAATGAGAAGTGGAGCGGAGAAAACCCCGCCCACCCCTTTATCCTGATG
TCTTTCCTGACCCTTCCTTCCTTGTCCCCCACTCTTTCCTGCTGGCCTTTCCAGGTGAGC
TCCAAAGTCCGTTCCCTCTTCAGGGAGAAGGTTATACTGAGACTCCGACTGAGTAGTCAC
CCCCCTGCCCTCATTTCCCCCTGTATTGCCTAAGTCTGGCGCAGGCTCTAGATTCAGGGA
TACTCACCTCTCAGGGGGCCCCTCAGAGCCTCCTGTCTCGGTTTCTCCACCTGTGAGATG
GTGAGTCATCTGGTTGAGGGGGCGTAAAGCATGAGGGAATCAGAAGCCCACTTGTGCAGA
CTCAGAGCTTGGACTCTCCTCCCACCGAGGGCGAGAACGAAACAGCTTTTCACATAAGCT
ATTGCCCTGCCCACACCGATGACCAGGAGCTCGGGGAGGAGGTTGAGGGGAGGGACTAGA
GTTAGACTATGTGAGGTGCTGCTGGGAGCTCAGTCTCCACATTGACCTCCCACCATGCAG
AGGTGGCTCGGGCTTCCCCTGCATCCCAAAGCCAGACTGCAGCCCCTGGGGGGGTGGTTC
CAGCTGCTGCTGCTCTCTTCCCCCACTTTACTTTCCAGGGTAGTGTTCGAGACTCAGGCT
GGGCCTGTGCAGGCAGGGAATTCTGCACCCTCACCCCCACCACCCCTCAACAACCAGAAG
GGCTGGGTTATGGGATGGGATCCCTTTGGGGCATCAGGCAGTATAAACCTGCCACTCTCA
GCTCACGATCTAATCCCACTCTGGTGTGGTTCAGCCTGGGCCCAGTCTCCCTGGCTGAAG
GAGCCCAGGTACAGGGGTTATAGGAAGCTGTTTGTTCTGTTTGGAGTTGGGCAGGGAGCT
GGGTCCTAGTCTCCATTTATGAGAAACAGATTTGGGGAGAGTAGATCATTGAAGCCACCC
GTCTTCGGCCTAAGCTGGATGTGTGTGTGGGATTGTGGTAGAGGGGGTGGTGTGGAGCAG
ACTGAGTCTACTCATAGGCTGCAACAAAGGTTGCTCTGTCCCTGGACATTGCGTCCATCC
TATCTTCCCCTCCTTGCTTCGCTGGCCACAGTGTCTCCCTCCCGCCTTGAGTATGTATGT
GGCTCTGCCATCCTCACTCATGATGGAGCAGAAGTGAGGAGTTGCAGCCTGGGAACACAG
AGACAGGCAGAAGACCAGGACCAGGCCCGGAGCGCACAGGGCTCTGTCTGAGCACCCTGC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               249-367, - strand, RNAz p=0.90358
               

               
               407-629, - strand, RNAz p=0.999265
               

               
               746-859, - strand, RNAz p=0.999073

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               249-367, - strand, RNAz p=0.90358
               

               
               407-629, - strand, RNAz p=0.999265
               

               
               746-859, - strand, RNAz p=0.999073

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               719-856, + strand, RNAmicro p=0.995948

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               719-856, + strand, RNAmicro p=0.995948

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               10-1320, gnl|bosTau2|chr19 (17348713-17347414)
               

               
               10-1320, gnl|Hg17|chr17 (1563789-1562552)
               

               
               10-1320, gnl|Mm7|chr11 (75545549-75547032)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-1320, gnl|bosTau2|chr19 (17348713-17347414)
               

               
               10-1320, gnl|Hg17|chr17 (1563789-1562552)
               

               
               10-1320, gnl|Mm7|chr11 (75545549-75547032)

	249-367, - strand, RNAz p=0.90358
	407-629, - strand, RNAz p=0.999265
	746-859, - strand, RNAz p=0.999073

	10-1320, gnl\|bosTau2\|chr19 (17348713-17347414)
	10-1320, gnl\|Hg17\|chr17 (1563789-1562552)
	10-1320, gnl\|Mm7\|chr11 (75545549-75547032)