Non-Coding RNA Search

Ss1.1-Lng1-LNG010030E12.5

Sequence:


               
               CTCCCAAAAGGAGGGCGTCTACCACATCTCAGTCTCCTTGGCCGAGGGGACTGGAACAGT
TCTCTATGACCCGTTGGTGACGCAGGCAGAAGAGCTCCGAGCTGCGGTGGAGGACATGGG
ATTCGAGGCCTCCGTCCTGGCTGAAAACTGTTCCAGCAACCACGTTGGGAACCACAGTGC
TGGGAATGCCACGGGGTCCACTGCGGTTGGTACCCCCACGCCTGTGCAGGAAGGGGCTCC
CCACCCTGGGGGGCTCCCCACAAACCACCACCCCGGCCGCGCGTCCGAGATCCCGCAGGC
CTCTGCTGCGGTGGCCCCGCAGAAGTGCTTCCTGCAGATCACAGGCATGACCTGCGCCTC
CTGTGTGTCCAACATAGAGAGAAACCTGCAGAAAGAAGCTGGCATTCTCTCCGTGCTGGT
GGCCTTGATGGCGGGAAAGGCAGAGGTGAAGTACAACCCGGACGTCATCCAGCCCCTGGA
GATAGCGCAGCTCATCCGGAAGCTGGGCTTCGAGGCCACGGTGCTGGAGGACTACAAGGG
CTCAGACGGCGACCTGGAGCTGGTGGTCACGGGGATGACCTGCACTTCCTGTGTTCACAA
CATAGAGTCCAGACTCACTCGGACGAACGGCGTCACCTACGCCTCCGTGGCCCTCGCCAC
CAGCAAAGCCCACGTGAAGTTTGATCCTGAACTGATCGGTCCGCGGGATATTGTCAGAAT
TATCGAGGAAATCGGCTTTCACGCCTCCCTGGCCCAGAGGAACCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCAAAAGGAGGGCGTCTACCACATCTCAGTCTCCTTGGCCGAGGGGACTGGAACAGT
TCTCTATGACCCGTTGGTGACGCAGGCAGAAGAGCTCCGAGCTGCGGTGGAGGACATGGG
ATTCGAGGCCTCCGTCCTGGCTGAAAACTGTTCCAGCAACCACGTTGGGAACCACAGTGC
TGGGAATGCCACGGGGTCCACTGCGGTTGGTACCCCCACGCCTGTGCAGGAAGGGGCTCC
CCACCCTGGGGGGCTCCCCACAAACCACCACCCCGGCCGCGCGTCCGAGATCCCGCAGGC
CTCTGCTGCGGTGGCCCCGCAGAAGTGCTTCCTGCAGATCACAGGCATGACCTGCGCCTC
CTGTGTGTCCAACATAGAGAGAAACCTGCAGAAAGAAGCTGGCATTCTCTCCGTGCTGGT
GGCCTTGATGGCGGGAAAGGCAGAGGTGAAGTACAACCCGGACGTCATCCAGCCCCTGGA
GATAGCGCAGCTCATCCGGAAGCTGGGCTTCGAGGCCACGGTGCTGGAGGACTACAAGGG
CTCAGACGGCGACCTGGAGCTGGTGGTCACGGGGATGACCTGCACTTCCTGTGTTCACAA
CATAGAGTCCAGACTCACTCGGACGAACGGCGTCACCTACGCCTCCGTGGCCCTCGCCAC
CAGCAAAGCCCACGTGAAGTTTGATCCTGAACTGATCGGTCCGCGGGATATTGTCAGAAT
TATCGAGGAAATCGGCTTTCACGCCTCCCTGGCCCAGAGGAACCCCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               143-302, + strand, RNAz p=0.900652

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               143-302, + strand, RNAz p=0.900652

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               143-402, gnl|bosTau2|chr12 (11172988-11172729)
               

               
               143-402, gnl|Hg17|chr13 (51442887-51442628)
               

               
               143-402, gnl|Mm7|chr8 (20805464-20805205)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               143-402, gnl|bosTau2|chr12 (11172988-11172729)
               

               
               143-402, gnl|Hg17|chr13 (51442887-51442628)
               

               
               143-402, gnl|Mm7|chr8 (20805464-20805205)

	143-402, gnl\|bosTau2\|chr12 (11172988-11172729)
	143-402, gnl\|Hg17\|chr13 (51442887-51442628)
	143-402, gnl\|Mm7\|chr8 (20805464-20805205)