Non-Coding RNA Search

Ss1.1-Lng1-LNG010033H05.5

Sequence:


               
               GGTTGTTAGTGAGCACATTGCATCTGCAGGACAAAGATTCTTCCATCCAGAAAGCTCTTA
GACATAGGCACTTTGAAGTGTTTTGGTCCCCATTGCGAAACACAGCCATGTGGTTCCCAT
TAAATTACGTGATTGACAGCTGCCCCTTTTGGGTTCCTTCATACAAACTCCTGTTGCTAA
ATGGCTCAGGTGGATGTTTGATGTATTTCTTTTGCCACCTAATACAAAGCATACATTTTT
CTTACTCATAGTCACTCATCAGGTTCTTGAATCTTTCATTATCAATGAATTGAGACAGGA
ACCGTGCCGGAGCCGTCCTTACACCCTTTGGAGTGGGTGTTCACTAAGCATTTCTCAATG
ATTCTAAGAACGGCTGGGTGAGGTCACATGCTCAGGAGAAGGAAGGAGGTTGGGAATGAG
CGATAGGAGCGTTTTCATTGACCTTTCCTCCGGGTTAGTTGCTGACTCCTTCAGCCAAGA
GACCCTGGCTTCTTGACCCCCATCAACTGTTGACATCACTGGGCTTTCAGGAAAAAGTGG
TCACGGCCACTTCCTTGCTCCAGCCCCTGCTCATAGGAATTCATATGAGCTGATCTCTTT
TGGTTACACCCTCGATTCCTTTGTGAGGAAAGAGAAAGTATCACGGACTAATGATGGTGA
CTAATTATGACTGGCTTCCTTTGTTTGAGAACTTATCTTTTACTGCTATTCATTTGCCTT
GAGAAATAAGGAAGTGGGGCTAGCAGATAGGGAGCACTGGACCGAGAGCCCCCCATGGCT
GTGCCTCCTGGGCCACGTCACTGCCCTTCTCTGGGCCTCAGTGTCCCTCTCGGTGCAATA
AGAATCGGACTCTGTGGGGGTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTGTTAGTGAGCACATTGCATCTGCAGGACAAAGATTCTTCCATCCAGAAAGCTCTTA
GACATAGGCACTTTGAAGTGTTTTGGTCCCCATTGCGAAACACAGCCATGTGGTTCCCAT
TAAATTACGTGATTGACAGCTGCCCCTTTTGGGTTCCTTCATACAAACTCCTGTTGCTAA
ATGGCTCAGGTGGATGTTTGATGTATTTCTTTTGCCACCTAATACAAAGCATACATTTTT
CTTACTCATAGTCACTCATCAGGTTCTTGAATCTTTCATTATCAATGAATTGAGACAGGA
ACCGTGCCGGAGCCGTCCTTACACCCTTTGGAGTGGGTGTTCACTAAGCATTTCTCAATG
ATTCTAAGAACGGCTGGGTGAGGTCACATGCTCAGGAGAAGGAAGGAGGTTGGGAATGAG
CGATAGGAGCGTTTTCATTGACCTTTCCTCCGGGTTAGTTGCTGACTCCTTCAGCCAAGA
GACCCTGGCTTCTTGACCCCCATCAACTGTTGACATCACTGGGCTTTCAGGAAAAAGTGG
TCACGGCCACTTCCTTGCTCCAGCCCCTGCTCATAGGAATTCATATGAGCTGATCTCTTT
TGGTTACACCCTCGATTCCTTTGTGAGGAAAGAGAAAGTATCACGGACTAATGATGGTGA
CTAATTATGACTGGCTTCCTTTGTTTGAGAACTTATCTTTTACTGCTATTCATTTGCCTT
GAGAAATAAGGAAGTGGGGCTAGCAGATAGGGAGCACTGGACCGAGAGCCCCCCATGGCT
GTGCCTCCTGGGCCACGTCACTGCCCTTCTCTGGGCCTCAGTGTCCCTCTCGGTGCAATA
AGAATCGGACTCTGTGGGGGTTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               479-637, - strand, RNAz p=0.940086

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               479-637, - strand, RNAz p=0.940086

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-857, gnl|bosTau2|chr7 (32578791-32579651)
               

               
               3-857, gnl|Hg17|chr1 (56675378-56674512)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-857, gnl|bosTau2|chr7 (32578791-32579651)
               

               
               3-857, gnl|Hg17|chr1 (56675378-56674512)

	3-857, gnl\|bosTau2\|chr7 (32578791-32579651)
	3-857, gnl\|Hg17\|chr1 (56675378-56674512)