Ss1.1-Lng1-LNG010042A01.5
|
TATTTTTTGTGTACTGTCTTAATTAGCAAGGAAAGAATGACTTTATTTAGGTAAGAGGGC
GTCGTGGTTTTGATACAACAGAGCATTTGATTCACAAAGCTTTCTCGAAGTCAGGGCCTT
TTGCAGGTGCAAAACCTATATAAAATTTTAATTTGCAGTGCGAGAACCGTTTGGCATTTT
AGTAATTGTTAGTCATCCCTGTACAGAAATTGAAGACAAGTCAATAGCGTTTAAAAGAAC
AACCCACAGTTGTGAAATTTGGAAGATGTCGTCTTTGGGCCACACACACTTTTAAATTAA
AAAGTTTTAATTTTTTTCTCCAGTAAAGATTGTTTGTCCAAACATGGGCTTGAACAACTT
ACCCTTACTTTTTAAAATGTTCACAACTTTCTAGTTGCAACATTTTTTAAATTAATGTAC
ACACTCTTAAGCAACAACAGAGATCATGAGCTCTAAATACAATGATGAATGAGTTGGGTA
ACATCCATTTGACAACTTTCTTAGAATTGAGTACTAGTTTCGACTGCATCTTAGCAAGCT
CAAGTGTAATAAGGACATTTCCTAAGATATGATTTAAATATCCACTAATTGAAGCCTCAG
ATGTTTTCTAGAGCTTTCTAGAGCAGTTAATAAGCTGCTTGTCCTAAGAGTAGAGGCAGA
GTAGTGTAGCAATTATAGACTCTGGCTCTGGAACAAGGCAGCCTTGATTCACATCTCTGC
TCTGTCCCTTCCTAGCTTTGTGACCTGGGGCAAACAACTTAATTCTCTGAATTGCATAAG
GTTAACTTAATAGGGATAATGAGAGTTGATATAAGGGAAGCTCTTAGAAGAGCTCTTGGC
AGAGTGCCCAACACATAAGAATTGCTCAGTGGGTGTTAGCAGTTACTATATAGATTTCTT
GATAATCTGGCACTAGTGCAAGTCATGTGCTCAATGAAGAATTCATAAACGAATTCTTTA
ATGAGTGAATGGACAAGAGGAAGATGTTGTCCAGGAAACTTAGAATCATTTTTAACCCGT
ATTCATCCTAGGCTTTTAAATGAAACAGCGTAGTTCTCTATAGTTATAAAATTATAGCCA
AATGTGGGAAAGGTTCCGAAGAGCTTAAAATCTAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TATTTTTTGTGTACTGTCTTAATTAGCAAGGAAAGAATGACTTTATTTAGGTAAGAGGGC
GTCGTGGTTTTGATACAACAGAGCATTTGATTCACAAAGCTTTCTCGAAGTCAGGGCCTT
TTGCAGGTGCAAAACCTATATAAAATTTTAATTTGCAGTGCGAGAACCGTTTGGCATTTT
AGTAATTGTTAGTCATCCCTGTACAGAAATTGAAGACAAGTCAATAGCGTTTAAAAGAAC
AACCCACAGTTGTGAAATTTGGAAGATGTCGTCTTTGGGCCACACACACTTTTAAATTAA
AAAGTTTTAATTTTTTTCTCCAGTAAAGATTGTTTGTCCAAACATGGGCTTGAACAACTT
ACCCTTACTTTTTAAAATGTTCACAACTTTCTAGTTGCAACATTTTTTAAATTAATGTAC
ACACTCTTAAGCAACAACAGAGATCATGAGCTCTAAATACAATGATGAATGAGTTGGGTA
ACATCCATTTGACAACTTTCTTAGAATTGAGTACTAGTTTCGACTGCATCTTAGCAAGCT
CAAGTGTAATAAGGACATTTCCTAAGATATGATTTAAATATCCACTAATTGAAGCCTCAG
ATGTTTTCTAGAGCTTTCTAGAGCAGTTAATAAGCTGCTTGTCCTAAGAGTAGAGGCAGA
GTAGTGTAGCAATTATAGACTCTGGCTCTGGAACAAGGCAGCCTTGATTCACATCTCTGC
TCTGTCCCTTCCTAGCTTTGTGACCTGGGGCAAACAACTTAATTCTCTGAATTGCATAAG
GTTAACTTAATAGGGATAATGAGAGTTGATATAAGGGAAGCTCTTAGAAGAGCTCTTGGC
AGAGTGCCCAACACATAAGAATTGCTCAGTGGGTGTTAGCAGTTACTATATAGATTTCTT
GATAATCTGGCACTAGTGCAAGTCATGTGCTCAATGAAGAATTCATAAACGAATTCTTTA
ATGAGTGAATGGACAAGAGGAAGATGTTGTCCAGGAAACTTAGAATCATTTTTAACCCGT
ATTCATCCTAGGCTTTTAAATGAAACAGCGTAGTTCTCTATAGTTATAAAATTATAGCCA
AATGTGGGAAAGGTTCCGAAGAGCTTAAAATCTAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
865-980, BP435632 full-length enriched swine cDNA library, adult lung Sus
(dbj|BP435632.1|), blast E-value=0, identity=100% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
865-980, BP435632 full-length enriched swine cDNA library, adult lung Sus
(dbj|BP435632.1|), blast E-value=0, identity=100% |
|
1-571, gnl|bosTau2|chr9 (58257333-58256751) |
|
1-571, gnl|Hg17|chr4 (20081533-20082152) |
|
1-571, gnl|Mm7|chr5 (47447006-47447519) |
| |
|
575-1113, gnl|bosTau2|chr9 (58255331-58254796) |
|
575-1113, gnl|canFam2|chr3 (91994623-91994324) |
|
575-1113, gnl|echTel1|scaffold_84874 (3214-2908) |
|
575-1113, gnl|hg17|chr4 (20082176-20082483) |
|
575-1113, gnl|Hg17|chr4 (20082175-20082676) |
|
575-1113, gnl|loxAfr1|scaffold_11884 (53396-53119) |
|
575-1113, gnl|mm7|chr5 (47447568-47447839) |
|
575-1113, gnl|oryCun1|scaffold_112750 (4848-4541) |
|
575-1113, gnl|panTro1|chr3 (20551271-20551578) |
|
575-1113, gnl|rheMac2|chr5 (15190936-15191243) |
|
575-1113, gnl|rn3|chr14 (67756497-67756231) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-571, gnl|bosTau2|chr9 (58257333-58256751) |
|
1-571, gnl|Hg17|chr4 (20081533-20082152) |
|
1-571, gnl|Mm7|chr5 (47447006-47447519) |
| |
|
575-1113, gnl|bosTau2|chr9 (58255331-58254796) |
|
575-1113, gnl|canFam2|chr3 (91994623-91994324) |
|
575-1113, gnl|echTel1|scaffold_84874 (3214-2908) |
|
575-1113, gnl|hg17|chr4 (20082176-20082483) |
|
575-1113, gnl|Hg17|chr4 (20082175-20082676) |
|
575-1113, gnl|loxAfr1|scaffold_11884 (53396-53119) |
|
575-1113, gnl|mm7|chr5 (47447568-47447839) |
|
575-1113, gnl|oryCun1|scaffold_112750 (4848-4541) |
|
575-1113, gnl|panTro1|chr3 (20551271-20551578) |
|
575-1113, gnl|rheMac2|chr5 (15190936-15191243) |
|
575-1113, gnl|rn3|chr14 (67756497-67756231) |
