Non-Coding RNA Search

Ss1.1-Lng1-LNG010042H12.5

Sequence:


               
               CCACCGTCTCCAGTTCGCGTCATGGCCGCCGCCACCGCTCTGGAGGCGGTCGCGCCTACG
GGCGCCCTGTGGGGCCTCGTGCAAGACTTCGTCATGGGTCAGCAGGAGGGCCCCGCAGAC
CAAGTGGCTGCAGGTACGGCAGACGGCGCCGCGCGGCTTCCGCTTGGGGGCCTCCAGGAG
GGAGCGGCCTCAGCACGGGCGCCGGGCGGGAAGGGAGCGGTGACTTTGAGAGATTGGTCC
CGGGCTGGTTGTGAGCACCGCGTGCTTAAGAACCATAACAAATTGCGAGTCGCTTGCAGT
CTTCCTTAAAGCGCCCTTATGACCCTCGTTTTGGTTTATAGCCACCCTGTGCACCGGCCT
GGGTTAGGAAAATCATTACCATTTCGCAGGTGTGGAAACTGAGGCCCAGAGAGGGCCAGA
GGCTTCCTGGGGGAGTTGGGACTTGGACGCAGGTCCTCCAGTTCAGAATCAGGTGCTCAC
TCCGCGAAAGCACGTTGTTTCGAGGAAGTTGATGTGACGAGAAGCATCTTCGGCAGCATC
AGCTCCAGTCGCGTGGCATGTTGGGAGTGGCCGCGCGACCCAATCTCTGACTGGCTGTAA
TTAATTGGAGAGAGGAGGAGAGAAACCAGCCTAGGGGGAGTTTGAGATGTTCTGCGTATC
TCTTCCCCCCATTCTTGTTCAAGTTCTTGATTAATTTGCTTCGTGCCTTTTTTATGTGGT
GTGTGTTTTTATATTTTTCCCAGAACTCCAATTTCCTGCTTTTCACCAGTTTAGGGATCT
CTTAGTTCTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCGTCTCCAGTTCGCGTCATGGCCGCCGCCACCGCTCTGGAGGCGGTCGCGCCTACG
GGCGCCCTGTGGGGCCTCGTGCAAGACTTCGTCATGGGTCAGCAGGAGGGCCCCGCAGAC
CAAGTGGCTGCAGGTACGGCAGACGGCGCCGCGCGGCTTCCGCTTGGGGGCCTCCAGGAG
GGAGCGGCCTCAGCACGGGCGCCGGGCGGGAAGGGAGCGGTGACTTTGAGAGATTGGTCC
CGGGCTGGTTGTGAGCACCGCGTGCTTAAGAACCATAACAAATTGCGAGTCGCTTGCAGT
CTTCCTTAAAGCGCCCTTATGACCCTCGTTTTGGTTTATAGCCACCCTGTGCACCGGCCT
GGGTTAGGAAAATCATTACCATTTCGCAGGTGTGGAAACTGAGGCCCAGAGAGGGCCAGA
GGCTTCCTGGGGGAGTTGGGACTTGGACGCAGGTCCTCCAGTTCAGAATCAGGTGCTCAC
TCCGCGAAAGCACGTTGTTTCGAGGAAGTTGATGTGACGAGAAGCATCTTCGGCAGCATC
AGCTCCAGTCGCGTGGCATGTTGGGAGTGGCCGCGCGACCCAATCTCTGACTGGCTGTAA
TTAATTGGAGAGAGGAGGAGAGAAACCAGCCTAGGGGGAGTTTGAGATGTTCTGCGTATC
TCTTCCCCCCATTCTTGTTCAAGTTCTTGATTAATTTGCTTCGTGCCTTTTTTATGTGGT
GTGTGTTTTTATATTTTTCCCAGAACTCCAATTTCCTGCTTTTCACCAGTTTAGGGATCT
CTTAGTTCTGAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               40-156, - strand, RNAz p=0.666278
               

               
               343-439, + strand, RNAz p=0.618326

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-156, - strand, RNAz p=0.666278
               

               
               343-439, + strand, RNAz p=0.618326

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-790, gnl|bosTau2|chr26 (10584492-10585318)
               

               
               1-790, gnl|Hg17|chr10 (99248152-99247353)
               

               
               1-790, gnl|Mm7|chr19 (41874973-41874018)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-790, gnl|bosTau2|chr26 (10584492-10585318)
               

               
               1-790, gnl|Hg17|chr10 (99248152-99247353)
               

               
               1-790, gnl|Mm7|chr19 (41874973-41874018)

	40-156, - strand, RNAz p=0.666278
	343-439, + strand, RNAz p=0.618326

	1-790, gnl\|bosTau2\|chr26 (10584492-10585318)
	1-790, gnl\|Hg17\|chr10 (99248152-99247353)
	1-790, gnl\|Mm7\|chr19 (41874973-41874018)