Non-Coding RNA Search

Ss1.1-Lng1-LNG010044D08.5

Sequence:


               
               ATTTTTTTCTCTCCAGGTGTCCAGCTTTGTGCCTGATCGAAGTCTCCTCGGCCGCGCTCA
GCGCGCTGTTTTTAAATGCGGGTGGTCTTCGGGGAAGAGTAACGTGCTCCCCCGACCCAG
AACGCCTCAGGGCCTCAGCGGCGAGGGGGACTGGGGTGCGCCCGCAGGGATCGGGCGGCG
CTGCGGGCAGCCGATGCGGGATAGGCGGGCCCAGCTAGGGCTTGGGCGTCGGTCGCCGGT
GGGGCCCGGAGCCGGGCGCGGAGCCCCTGACAGGACAGACTCCCAGCGGCAGCAGAATGA
GTGCAGAGGCAAGTGCCCGGCCTCTGCGAGTGGGCTCCCGTGTGGAGGTGATTGGAAAAG
GCCACCGTGGCACTGTGGCCTATGTTGGGGCCACCCTCTTTGCCACTGGCAAATGGGTAG
GCGTGATTCTGGATGAAGCAAAGGGCAAGAATGATGGAACCGTCCAAGGCAGGAAATATT
TTACTTGCGATGAAGGGCATGGCATCTTTGTGCGCCAGTCCCAGATCCAGGTATTTGAAG
ATGGAGCAGATACTACTTCCCCAGAGACACCTGATTCTTCTGCCTCCAAGGTCCTCAGAA
GAGAGGGAACTGATTCAAATGCAAAGACCAGCAAACTGCCCACCCGCCCAGCCAGTACTG
GTGTGGCTGGGGCCAGTAGCTCCCTGGGCCCCTCTGGCTCAGCATCAGCAGGTGAGCTGA
GCAGCAGTGAGCCCAGCACTCCAGCTCAGACTCCTCTGGCAGCACCCATCATTCCCACGC
CAGCCCTCACCTCTCCTGGAGCAGCTCCCCCACTTCCTTCCCCCTCTAAGGAGGAGGAGG
GGCTGAGGGCCCAGGTGCGGGACCTGGAGGAGAAACTGGAGACCCTGCGACTGAAACGCG
CAGAAGACAAGGCAAAGCTAAAAGAGCTGGAAAAACACAAGATCCAGCTGGAGCAGGTGC
AGGAATGGAAAAGCAAAATGCAAGAGCAGCAGGCAGACCTGCAGCGGCGCCTCAAGGAGG
CGCGCAAGGAAGCCAAGGAGGCGCTGGAGGCCAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTTTCTCTCCAGGTGTCCAGCTTTGTGCCTGATCGAAGTCTCCTCGGCCGCGCTCA
GCGCGCTGTTTTTAAATGCGGGTGGTCTTCGGGGAAGAGTAACGTGCTCCCCCGACCCAG
AACGCCTCAGGGCCTCAGCGGCGAGGGGGACTGGGGTGCGCCCGCAGGGATCGGGCGGCG
CTGCGGGCAGCCGATGCGGGATAGGCGGGCCCAGCTAGGGCTTGGGCGTCGGTCGCCGGT
GGGGCCCGGAGCCGGGCGCGGAGCCCCTGACAGGACAGACTCCCAGCGGCAGCAGAATGA
GTGCAGAGGCAAGTGCCCGGCCTCTGCGAGTGGGCTCCCGTGTGGAGGTGATTGGAAAAG
GCCACCGTGGCACTGTGGCCTATGTTGGGGCCACCCTCTTTGCCACTGGCAAATGGGTAG
GCGTGATTCTGGATGAAGCAAAGGGCAAGAATGATGGAACCGTCCAAGGCAGGAAATATT
TTACTTGCGATGAAGGGCATGGCATCTTTGTGCGCCAGTCCCAGATCCAGGTATTTGAAG
ATGGAGCAGATACTACTTCCCCAGAGACACCTGATTCTTCTGCCTCCAAGGTCCTCAGAA
GAGAGGGAACTGATTCAAATGCAAAGACCAGCAAACTGCCCACCCGCCCAGCCAGTACTG
GTGTGGCTGGGGCCAGTAGCTCCCTGGGCCCCTCTGGCTCAGCATCAGCAGGTGAGCTGA
GCAGCAGTGAGCCCAGCACTCCAGCTCAGACTCCTCTGGCAGCACCCATCATTCCCACGC
CAGCCCTCACCTCTCCTGGAGCAGCTCCCCCACTTCCTTCCCCCTCTAAGGAGGAGGAGG
GGCTGAGGGCCCAGGTGCGGGACCTGGAGGAGAAACTGGAGACCCTGCGACTGAAACGCG
CAGAAGACAAGGCAAAGCTAAAAGAGCTGGAAAAACACAAGATCCAGCTGGAGCAGGTGC
AGGAATGGAAAAGCAAAATGCAAGAGCAGCAGGCAGACCTGCAGCGGCGCCTCAAGGAGG
CGCGCAAGGAAGCCAAGGAGGCGCTGGAGGCCAAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5RDE0_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5RDE0_PONPY

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               315-434, + strand, RNAz p=0.763026

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               315-434, + strand, RNAz p=0.763026

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               276-524, gnl|bosTau2|chr11 (7945073-7945321)
               

               
               276-524, gnl|Hg17|chr2 (74517030-74516782)
               


               
               829-1032, gnl|bosTau2|chr11 (7952174-7952377)
               

               
               829-1032, gnl|Hg17|chr2 (74509960-74509757)
               

               
               829-1032, gnl|Mm7|chr6 (83214918-83215121)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               276-524, gnl|bosTau2|chr11 (7945073-7945321)
               

               
               276-524, gnl|Hg17|chr2 (74517030-74516782)
               


               
               829-1032, gnl|bosTau2|chr11 (7952174-7952377)
               

               
               829-1032, gnl|Hg17|chr2 (74509960-74509757)
               

               
               829-1032, gnl|Mm7|chr6 (83214918-83215121)

	276-524, gnl\|bosTau2\|chr11 (7945073-7945321)
	276-524, gnl\|Hg17\|chr2 (74517030-74516782)

	829-1032, gnl\|bosTau2\|chr11 (7952174-7952377)
	829-1032, gnl\|Hg17\|chr2 (74509960-74509757)
	829-1032, gnl\|Mm7\|chr6 (83214918-83215121)