Ss1.1-Lng1-LNG010057E10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCGGAAGTGATCCCCCAGGACAGAGTTGCGGCTGAGGACCCCGGCTGCAGGGCCAGGTT CGGGACCATGAGCTGGATTCCTTTTAAGATTGGGCAGCCCAAGAAACAGATTGTCCCCAA AACAGTGGAGAGAGACTTTGAAAGGGAGTATGGAAAACTGCAGCAGCTGGAGGAGCAGAC CAAGCGGCTGCAGAAGGACCTGAAGAAGAGCACGGATGCTGACCTGGCCATGTCCAAATC CGCTGTGAAAATATCCTTGGACTTGCTCTCCAACCCCCTCTGCGAGCAAGACCAGGACTT TCTGAACATGGTGACAGCCCTGGACACGGCCATGAAGCGGATGGATGCCTTCAACCAGGA AAAGGTGAACCAGATACAAAAGACCGTGATTGAGCCCTTAAAAAAGTTTGGCAGTGTCTT CCCGAGCCTCAACATGGCGGTGAAACGGCGGGAGCAGGCCTTGCAGGACTACAGGAGGCT GCAGGCCAAGGTGGAGAAGTATGAGGAGAAGGAGAAGACGGGGCCGGTGCTGGCCAAGCT CCACCAGGCCCGGGAAGAGCTCCGGCCCGTGCGGGACGACTTTGAGGCCAAGAACAAGCA GCTCCTGGATGAGATGCCACGGTTCTACAACAGCCGCCTGGACTACTTCCAACCCAGCTT CGAGTCCCTGATCCGCGCACAGGTCGTGTACTACTCGGAAATGCACAAGATCTTTGGAGA CCTGACCCAGCAGCTCGACCAGCCTGGCCACACTGACGAGCAGCGGGAGCGGGAGAACGA GGCCAGGCTGAGCGAGCTCAGGGCCCTCTCCATCGTGGCCGATGACTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCGGAAGTGATCCCCCAGGACAGAGTTGCGGCTGAGGACCCCGGCTGCAGGGCCAGGTT CGGGACCATGAGCTGGATTCCTTTTAAGATTGGGCAGCCCAAGAAACAGATTGTCCCCAA AACAGTGGAGAGAGACTTTGAAAGGGAGTATGGAAAACTGCAGCAGCTGGAGGAGCAGAC CAAGCGGCTGCAGAAGGACCTGAAGAAGAGCACGGATGCTGACCTGGCCATGTCCAAATC CGCTGTGAAAATATCCTTGGACTTGCTCTCCAACCCCCTCTGCGAGCAAGACCAGGACTT TCTGAACATGGTGACAGCCCTGGACACGGCCATGAAGCGGATGGATGCCTTCAACCAGGA AAAGGTGAACCAGATACAAAAGACCGTGATTGAGCCCTTAAAAAAGTTTGGCAGTGTCTT CCCGAGCCTCAACATGGCGGTGAAACGGCGGGAGCAGGCCTTGCAGGACTACAGGAGGCT GCAGGCCAAGGTGGAGAAGTATGAGGAGAAGGAGAAGACGGGGCCGGTGCTGGCCAAGCT CCACCAGGCCCGGGAAGAGCTCCGGCCCGTGCGGGACGACTTTGAGGCCAAGAACAAGCA GCTCCTGGATGAGATGCCACGGTTCTACAACAGCCGCCTGGACTACTTCCAACCCAGCTT CGAGTCCCTGATCCGCGCACAGGTCGTGTACTACTCGGAAATGCACAAGATCTTTGGAGA CCTGACCCAGCAGCTCGACCAGCCTGGCCACACTGACGAGCAGCGGGAGCGGGAGAACGA GGCCAGGCTGAGCGAGCTCAGGGCCCTCTCCATCGTGGCCGATGACTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 406-524, + strand, RNAz p=0.752033 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 406-524, + strand, RNAz p=0.752033 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 227-368, gnl|bosTau2|chr8 (30912267-30912408) | |
| 227-368, gnl|canFam2|chr25 (37639429-37639250) | |
| 227-368, gnl|danRer3|chr20 (46530562-46530402) | |
| 227-368, gnl|echTel1|scaffold_297672 (26457-26645) | |
| 227-368, gnl|fr1|chrUn (296244169-296244340) | |
| 227-368, gnl|hg17|chr8 (22543876-22544065) | |
| 227-368, gnl|Hg17|chr8 (22544037-22543896) | |
| 227-368, gnl|loxAfr1|scaffold_30635 (33189-33008) | |
| 227-368, gnl|mm7|chr14 (64773495-64773306) | |
| 227-368, gnl|Mm7|chr14 (64773333-64773474) | |
| 227-368, gnl|monDom2|scaffold_1 (72814213-72814039) | |
| 227-368, gnl|oryCun1|scaffold_204802 (38660-38829) | |
| 227-368, gnl|panTro1|chr7 (23480321-23480510) | |
| 227-368, gnl|rheMac2|chr8 (22580034-22580223) | |
| 227-368, gnl|rn3|chr15 (50546161-50545974) | |
| 227-368, gnl|xenTro1|scaffold_106 (968694-968543) | |
| 406-558, gnl|bosTau2|chr8 (30922156-30922309) | |
| 406-558, gnl|Hg17|chr8 (22537821-22537668) | |
| 406-558, gnl|Mm7|chr14 (64778934-64779087) | |
| 667-828, gnl|bosTau2|chr8 (30925038-30925199) | |
| 667-828, gnl|canFam2|chr25 (37648784-37648592) | |
| 667-828, gnl|danRer3|chrUn (74275306-74275464) | |
| 667-828, gnl|dasNov1|scaffold_12149 (22618-22795) | |
| 667-828, gnl|echTel1|scaffold_297672 (17805-18001) | |
| 667-828, gnl|fr1|chrUn (275802260-275802088) | |
| 667-828, gnl|hg17|chr8 (22534875-22535062) | |
| 667-828, gnl|Hg17|chr8 (22535040-22534881) | |
| 667-828, gnl|loxAfr1|scaffold_1644 (17767-17578) | |
| 667-828, gnl|mm7|chr14 (64781776-64781587) | |
| 667-828, gnl|Mm7|chr14 (64781607-64781768) | |
| 667-828, gnl|monDom2|scaffold_1 (72827010-72826804) | |
| 667-828, gnl|oryCun1|scaffold_149348 (19306-19476) | |
| 667-828, gnl|panTro1|chr7 (23471324-23471511) | |
| 667-828, gnl|rheMac2|chr8 (22571093-22571278) | |
| 667-828, gnl|rn3|chr15 (50554325-50554136) | |
| 667-828, gnl|tetNig1|chr12 (682030-682192) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 227-368, gnl|bosTau2|chr8 (30912267-30912408) | |
| 227-368, gnl|canFam2|chr25 (37639429-37639250) | |
| 227-368, gnl|danRer3|chr20 (46530562-46530402) | |
| 227-368, gnl|echTel1|scaffold_297672 (26457-26645) | |
| 227-368, gnl|fr1|chrUn (296244169-296244340) | |
| 227-368, gnl|hg17|chr8 (22543876-22544065) | |
| 227-368, gnl|Hg17|chr8 (22544037-22543896) | |
| 227-368, gnl|loxAfr1|scaffold_30635 (33189-33008) | |
| 227-368, gnl|mm7|chr14 (64773495-64773306) | |
| 227-368, gnl|Mm7|chr14 (64773333-64773474) | |
| 227-368, gnl|monDom2|scaffold_1 (72814213-72814039) | |
| 227-368, gnl|oryCun1|scaffold_204802 (38660-38829) | |
| 227-368, gnl|panTro1|chr7 (23480321-23480510) | |
| 227-368, gnl|rheMac2|chr8 (22580034-22580223) | |
| 227-368, gnl|rn3|chr15 (50546161-50545974) | |
| 227-368, gnl|xenTro1|scaffold_106 (968694-968543) | |
| 406-558, gnl|bosTau2|chr8 (30922156-30922309) | |
| 406-558, gnl|Hg17|chr8 (22537821-22537668) | |
| 406-558, gnl|Mm7|chr14 (64778934-64779087) | |
| 667-828, gnl|bosTau2|chr8 (30925038-30925199) | |
| 667-828, gnl|canFam2|chr25 (37648784-37648592) | |
| 667-828, gnl|danRer3|chrUn (74275306-74275464) | |
| 667-828, gnl|dasNov1|scaffold_12149 (22618-22795) | |
| 667-828, gnl|echTel1|scaffold_297672 (17805-18001) | |
| 667-828, gnl|fr1|chrUn (275802260-275802088) | |
| 667-828, gnl|hg17|chr8 (22534875-22535062) | |
| 667-828, gnl|Hg17|chr8 (22535040-22534881) | |
| 667-828, gnl|loxAfr1|scaffold_1644 (17767-17578) | |
| 667-828, gnl|mm7|chr14 (64781776-64781587) | |
| 667-828, gnl|Mm7|chr14 (64781607-64781768) | |
| 667-828, gnl|monDom2|scaffold_1 (72827010-72826804) | |
| 667-828, gnl|oryCun1|scaffold_149348 (19306-19476) | |
| 667-828, gnl|panTro1|chr7 (23471324-23471511) | |
| 667-828, gnl|rheMac2|chr8 (22571093-22571278) | |
| 667-828, gnl|rn3|chr15 (50554325-50554136) | |
| 667-828, gnl|tetNig1|chr12 (682030-682192) |