Non-Coding RNA Search

Ss1.1-Lng1-LNG010062D07.5

Sequence:


               
               TAAAATGATGCACTTAGGGAGTCCCTGTGGTGGCTCAGTGGTAACGAACCCGACTAGGAT
CCATGAGGATGCAGGTTCGATCCCTGGTCTCGCTCAGTGGGTTAAGGATCCGGCATTACA
GTGAACTGTGGGGTAGGTCACAGACAAGGCTCAGATCTCACGTTGCTGTGGTGGCGGAGT
AGGCAAGTAGCTGTAGCTCGGATTTGAACCCTAGACTGGGAATCTCCATATGCTGAGGGT
GCAGCCCTAAAAAGAAGAAAATTAAAATGATGCACTTGATTTAAGTTCCTTGCCTGCAGC
CACCCAGTGAGTCAGCAGTGGGCCAGGGACTAAGATTTGGGCCTCCTGCCTTTCAAGCCT
CACACTTGCTTTGTGTTAATAAACGGTATTTATGCAGATCTGCCAGATATTTGAAAGTGC
TTAATTTTACTGCAGTAAATACTAAGAATCCTTTTTAAAGCATGGAAACCAAGCCCCAGG
CAGGGAAAACACGATTTGCCTTCAGAGCCTTTGACAAACTCACATTGGCACTAGGATTAG
ACCATAGCTTGTTGGCCTTGATTCCATCTCCTACTGAGGCTGGCTGAAGGGGTCAGGAGC
CCTGCTGTGGCCACAAGGCCAAAGCTGGACCTGAAAATACTCTTGCAGATGAAACTGGAA
CACACGACGTCCTACCCACAGAGTCAGCACGTCACAGCTGACTGCCATCAAGGGATGCGA
GGGGGAAGGTTATATTCCTGGGATACTGGTGGTCAGAACCGACTGCTCTCTGCCTTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCTTTCTTTCTTTCAGATTTTTATTTTCTCTCTGCC
TTTCTTGGCTGTGTGACAGGTGCCCTGCAGTTACCTTCCTGTGGTTGTGAACGTGCCATA
GGAAGGCCTCATCCATCAAGAAAAAGCTGTAGGCATCCAAGAGAAAGGGAGAAGGAATCG
TGAATTGTAAACTACTTGAGTGCAGAGAACGCAGGGAGTGGTTTCTTCCTTTCGTCATCA
GAAGAAGGCCAGACGTGCTGTAGACCCTCAGCCAGGGATACATTGTGATAAGCTGATAGA
GAAACACTGAGAGGAAGTGTTCAGCAAAATGAAAGCTGAATTTCCAAGATGGGTCTGATT
GTGTTCAGATGAGAGCGGGGTTTGAATGCAGCTTTCACCTGGAACCCTCAGCGTTAAGGT
GCACAGGGCATGCGTTATTGCCTTAATTCTCACAATTCCCCTGGCAGCCTGGGATGGTAG
GAGCTGATGTTCACCTCTGCGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAATGATGCACTTAGGGAGTCCCTGTGGTGGCTCAGTGGTAACGAACCCGACTAGGAT
CCATGAGGATGCAGGTTCGATCCCTGGTCTCGCTCAGTGGGTTAAGGATCCGGCATTACA
GTGAACTGTGGGGTAGGTCACAGACAAGGCTCAGATCTCACGTTGCTGTGGTGGCGGAGT
AGGCAAGTAGCTGTAGCTCGGATTTGAACCCTAGACTGGGAATCTCCATATGCTGAGGGT
GCAGCCCTAAAAAGAAGAAAATTAAAATGATGCACTTGATTTAAGTTCCTTGCCTGCAGC
CACCCAGTGAGTCAGCAGTGGGCCAGGGACTAAGATTTGGGCCTCCTGCCTTTCAAGCCT
CACACTTGCTTTGTGTTAATAAACGGTATTTATGCAGATCTGCCAGATATTTGAAAGTGC
TTAATTTTACTGCAGTAAATACTAAGAATCCTTTTTAAAGCATGGAAACCAAGCCCCAGG
CAGGGAAAACACGATTTGCCTTCAGAGCCTTTGACAAACTCACATTGGCACTAGGATTAG
ACCATAGCTTGTTGGCCTTGATTCCATCTCCTACTGAGGCTGGCTGAAGGGGTCAGGAGC
CCTGCTGTGGCCACAAGGCCAAAGCTGGACCTGAAAATACTCTTGCAGATGAAACTGGAA
CACACGACGTCCTACCCACAGAGTCAGCACGTCACAGCTGACTGCCATCAAGGGATGCGA
GGGGGAAGGTTATATTCCTGGGATACTGGTGGTCAGAACCGACTGCTCTCTGCCTTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCTTTCTTTCTTTCAGATTTTTATTTTCTCTCTGCC
TTTCTTGGCTGTGTGACAGGTGCCCTGCAGTTACCTTCCTGTGGTTGTGAACGTGCCATA
GGAAGGCCTCATCCATCAAGAAAAAGCTGTAGGCATCCAAGAGAAAGGGAGAAGGAATCG
TGAATTGTAAACTACTTGAGTGCAGAGAACGCAGGGAGTGGTTTCTTCCTTTCGTCATCA
GAAGAAGGCCAGACGTGCTGTAGACCCTCAGCCAGGGATACATTGTGATAAGCTGATAGA
GAAACACTGAGAGGAAGTGTTCAGCAAAATGAAAGCTGAATTTCCAAGATGGGTCTGATT
GTGTTCAGATGAGAGCGGGGTTTGAATGCAGCTTTCACCTGGAACCCTCAGCGTTAAGGT
GCACAGGGCATGCGTTATTGCCTTAATTCTCACAATTCCCCTGGCAGCCTGGGATGGTAG
GAGCTGATGTTCACCTCTGCGCTG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               538-695, + strand, RNAz p=0.999481
               

               
               579-695, - strand, RNAz p=0.976554
               

               
               1054-1173, + strand, RNAz p=0.808779

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               538-695, + strand, RNAz p=0.999481
               

               
               579-695, - strand, RNAz p=0.976554
               

               
               1054-1173, + strand, RNAz p=0.808779

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               264-751, gnl|bosTau2|chr4 (51143653-51143164)
               

               
               264-751, gnl|canFam2|chr14 (9088347-9087992)
               

               
               264-751, gnl|dasNov1|scaffold_5633 (40237-40612)
               

               
               264-751, gnl|echTel1|scaffold_246611 (4196-4492)
               

               
               264-751, gnl|hg17|chr7 (130069649-130070001)
               

               
               264-751, gnl|Hg17|chr7 (130070185-130069696)
               

               
               264-751, gnl|mm7|chr6 (31031266-31031482)
               

               
               264-751, gnl|monDom2|scaffold_22 (13772118-13771818)
               

               
               264-751, gnl|oryCun1|scaffold_178700 (35578-35276)
               

               
               264-751, gnl|panTro1|chr6 (132652190-132652542)
               

               
               264-751, gnl|rheMac2|chr3 (168315474-168315822)
               

               
               264-751, gnl|rn3|chr4 (58420254-58420517)
               


               
               858-1284, gnl|bosTau2|chr4 (51142819-51142402)
               

               
               858-1284, gnl|Hg17|chr7 (130069622-130069178)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               264-751, gnl|bosTau2|chr4 (51143653-51143164)
               

               
               264-751, gnl|canFam2|chr14 (9088347-9087992)
               

               
               264-751, gnl|dasNov1|scaffold_5633 (40237-40612)
               

               
               264-751, gnl|echTel1|scaffold_246611 (4196-4492)
               

               
               264-751, gnl|hg17|chr7 (130069649-130070001)
               

               
               264-751, gnl|Hg17|chr7 (130070185-130069696)
               

               
               264-751, gnl|mm7|chr6 (31031266-31031482)
               

               
               264-751, gnl|monDom2|scaffold_22 (13772118-13771818)
               

               
               264-751, gnl|oryCun1|scaffold_178700 (35578-35276)
               

               
               264-751, gnl|panTro1|chr6 (132652190-132652542)
               

               
               264-751, gnl|rheMac2|chr3 (168315474-168315822)
               

               
               264-751, gnl|rn3|chr4 (58420254-58420517)
               


               
               858-1284, gnl|bosTau2|chr4 (51142819-51142402)
               

               
               858-1284, gnl|Hg17|chr7 (130069622-130069178)

	538-695, + strand, RNAz p=0.999481
	579-695, - strand, RNAz p=0.976554
	1054-1173, + strand, RNAz p=0.808779

	264-751, gnl\|bosTau2\|chr4 (51143653-51143164)
	264-751, gnl\|canFam2\|chr14 (9088347-9087992)
	264-751, gnl\|dasNov1\|scaffold_5633 (40237-40612)
	264-751, gnl\|echTel1\|scaffold_246611 (4196-4492)
	264-751, gnl\|hg17\|chr7 (130069649-130070001)
	264-751, gnl\|Hg17\|chr7 (130070185-130069696)
	264-751, gnl\|mm7\|chr6 (31031266-31031482)
	264-751, gnl\|monDom2\|scaffold_22 (13772118-13771818)
	264-751, gnl\|oryCun1\|scaffold_178700 (35578-35276)
	264-751, gnl\|panTro1\|chr6 (132652190-132652542)
	264-751, gnl\|rheMac2\|chr3 (168315474-168315822)
	264-751, gnl\|rn3\|chr4 (58420254-58420517)

	858-1284, gnl\|bosTau2\|chr4 (51142819-51142402)
	858-1284, gnl\|Hg17\|chr7 (130069622-130069178)