Non-Coding RNA Search

Ss1.1-Lng1-LNG010063E04.5

Sequence:


               
               CTTTAAAAAGGAGAGAAGACGAAGAAGAAAGAAAAGAAAAGACAACTCCACTTTCACTGC
AGTTGTGTGTCTAATTCTTTCTTTGGCTATTATCAAATACAAACGTCTCCTAGAAGAATA
GTCCCCAAACTGTGCTGCTAATATTCAAGTCTGTTTTACAGGCTCCCAAGATGTATTACT
GCTGAGATCTGTAGTAGGGAGAACATTTTATATTCTGGGGAAGGATTTTTGCTTGAAGAA
TTTTATTTGTTGAATGGTAATGAGGGAATTGTGCTCTTTCTTATTTTTAAATGTTTGAGC
AATTTTAAAATGCACATCTGATGTTTAAAAAACCTTCTTCGTTGCCTATCCATTGCTTTT
AGGATAAAGTCTAAACGCCTTAGTATTCAGTAGGAAGCAAACCTCTCCTTTCTCATTTCT
TTCCACTCCTCGTTTTCCCACCCAGTCTCCGAGAAAGCCACCCTCTTAGGTTGACTTCCA
TGCCCCAGCTGCCCCAGAGGAAGGGTGCCTGGTCATCTCAGTCTGAGCCAGGTCTCTCTC
CTCTAGGCTCATGAATTACCCTTTGCACCTATCATGGGATGTAGCCCATGCTAGAGACAC
TTAGGGATAAGTTGGCAGACTTTCCTTCCCTCTCTGTTCATTGCCCTCCCTCCCCTACCC
CCAGGAAAACAGTGTGTGGGAGACAGGCCTGGGGGTTTTAGGTCTGGTATTAAAAAGGCA
GTGTGGCACAGAGGAAGAAGCTTTGGAGTCAAATCCTAGGATTGCCGCTTGTTTTGTGGC
ATTAGAGAAGTGCTTTAAATTCTCTAGGCCTATTCTCTTCTCTGTAAAATGGGGATAATA
CCTACCTTGTTGAGGTTGTTGTGTGGATTAGGAAAGATGAATTGGAAGTTCCCCTTATGA
TGCCAAGCATGCTTATCATCGGTAAGTAGCATCATGATGATATTGTGTGTGTGTATCCAA
AGGAGATCAATCTATAATGCCCAGGTTTTAAAACCCTTGAAGCTGGTTCCCATTTCCTGC
TCAGTCACTAACTTAGGAAACCCATTGCTCTGGGAATGAAGCAGGTGAAAGGGCTTTTTG
AATTACAGTATTGTCGGGGTGGCATGTGTGCAGTTGGGGAGGAGACGCTTGCTGGCTTTG
GTATACTTTGTCCGGTTACAATGGACAGTTAGAGCACTTCTCTTGATGGCAGAAGGAAAA
GGCACATAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTAAAAAGGAGAGAAGACGAAGAAGAAAGAAAAGAAAAGACAACTCCACTTTCACTGC
AGTTGTGTGTCTAATTCTTTCTTTGGCTATTATCAAATACAAACGTCTCCTAGAAGAATA
GTCCCCAAACTGTGCTGCTAATATTCAAGTCTGTTTTACAGGCTCCCAAGATGTATTACT
GCTGAGATCTGTAGTAGGGAGAACATTTTATATTCTGGGGAAGGATTTTTGCTTGAAGAA
TTTTATTTGTTGAATGGTAATGAGGGAATTGTGCTCTTTCTTATTTTTAAATGTTTGAGC
AATTTTAAAATGCACATCTGATGTTTAAAAAACCTTCTTCGTTGCCTATCCATTGCTTTT
AGGATAAAGTCTAAACGCCTTAGTATTCAGTAGGAAGCAAACCTCTCCTTTCTCATTTCT
TTCCACTCCTCGTTTTCCCACCCAGTCTCCGAGAAAGCCACCCTCTTAGGTTGACTTCCA
TGCCCCAGCTGCCCCAGAGGAAGGGTGCCTGGTCATCTCAGTCTGAGCCAGGTCTCTCTC
CTCTAGGCTCATGAATTACCCTTTGCACCTATCATGGGATGTAGCCCATGCTAGAGACAC
TTAGGGATAAGTTGGCAGACTTTCCTTCCCTCTCTGTTCATTGCCCTCCCTCCCCTACCC
CCAGGAAAACAGTGTGTGGGAGACAGGCCTGGGGGTTTTAGGTCTGGTATTAAAAAGGCA
GTGTGGCACAGAGGAAGAAGCTTTGGAGTCAAATCCTAGGATTGCCGCTTGTTTTGTGGC
ATTAGAGAAGTGCTTTAAATTCTCTAGGCCTATTCTCTTCTCTGTAAAATGGGGATAATA
CCTACCTTGTTGAGGTTGTTGTGTGGATTAGGAAAGATGAATTGGAAGTTCCCCTTATGA
TGCCAAGCATGCTTATCATCGGTAAGTAGCATCATGATGATATTGTGTGTGTGTATCCAA
AGGAGATCAATCTATAATGCCCAGGTTTTAAAACCCTTGAAGCTGGTTCCCATTTCCTGC
TCAGTCACTAACTTAGGAAACCCATTGCTCTGGGAATGAAGCAGGTGAAAGGGCTTTTTG
AATTACAGTATTGTCGGGGTGGCATGTGTGCAGTTGGGGAGGAGACGCTTGCTGGCTTTG
GTATACTTTGTCCGGTTACAATGGACAGTTAGAGCACTTCTCTTGATGGCAGAAGGAAAA
GGCACATAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               467-585, - strand, RNAz p=0.879077
               

               
               666-783, + strand, RNAz p=0.988823

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               467-585, - strand, RNAz p=0.879077
               

               
               666-783, + strand, RNAz p=0.988823

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               2-783, gnl|bosTau2|chr11 (76311783-76311011)
               

               
               2-783, gnl|Hg17|chr9 (123453030-123452348)
               


               
               788-1212, gnl|bosTau2|chr11 (76310663-76310233)
               

               
               788-1212, gnl|Hg17|chr9 (123452242-123451778)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-783, gnl|bosTau2|chr11 (76311783-76311011)
               

               
               2-783, gnl|Hg17|chr9 (123453030-123452348)
               


               
               788-1212, gnl|bosTau2|chr11 (76310663-76310233)
               

               
               788-1212, gnl|Hg17|chr9 (123452242-123451778)

	467-585, - strand, RNAz p=0.879077
	666-783, + strand, RNAz p=0.988823

	2-783, gnl\|bosTau2\|chr11 (76311783-76311011)
	2-783, gnl\|Hg17\|chr9 (123453030-123452348)

	788-1212, gnl\|bosTau2\|chr11 (76310663-76310233)
	788-1212, gnl\|Hg17\|chr9 (123452242-123451778)