Non-Coding RNA Search

Ss1.1-Lng1-LNG010065G09.5

Sequence:


               
               ACAATTCGACAAGAGAATTGGACCGGCCACCGCGACTCCAAGCCTGGTCCCGAGAGAACA
AGGGGGTGGCTTCCCCTCCCCCTTTGAGACAAAACTAACTCCCGGGCGCACCCCCCCAAC
TCCCCGACAAGAGGGTCCTGGTGGATGCGCGGGCACCTGGCAACCGCCTGGATGGAAGCA
AAGCCCAAGAGGGAGAGTAGGGTCCCCGGTTCCGGCTCCCGCCGCATCTTCCGCTCCTCA
CCTCACGCTGCCTGAGCCTCTGCCTCCACCACAACCCAAGCCGCCACAGCCGCCACGGTC
CGGGCCATTTTCCACTCAGCCGCCTCAGCCGCTGCGGAGAGCTTCGGCAGACTCCGCGGC
CAGCCAAGCACAGACGTCACTTCCGGCCGGGGAAGCACCGCCTTCCGCGCTCAAACTTCT
CAAGCATTGGCTGGTGTTGACGACCTACCTGAGGTAGTGGGCGGGGCTTGGGAGCGAAGC
CTGAGGTTCCAGATGGGGTAGAAGGGGGGCTCCCCCAGAAAAATGCTTGACAGGCTGTGG
ACGTCTCCCTGTGCAGCCCCAGACCAAGGGACAGGGTCTCGAAGACCCGAGCCGGCCACC
TCTCCAGCCTGGCGTCAGAGGCCCCGCCAACCACCGAACGACTCTATTGTTCCCGTGCCC
TCTCTTGGGACTCCGCACTCTCCCTATCCAAGCCGCAGCTTCCAGATTCGTGGTTTTTGC
CCCAGGCCGCACGGAGATAACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAATTCGACAAGAGAATTGGACCGGCCACCGCGACTCCAAGCCTGGTCCCGAGAGAACA
AGGGGGTGGCTTCCCCTCCCCCTTTGAGACAAAACTAACTCCCGGGCGCACCCCCCCAAC
TCCCCGACAAGAGGGTCCTGGTGGATGCGCGGGCACCTGGCAACCGCCTGGATGGAAGCA
AAGCCCAAGAGGGAGAGTAGGGTCCCCGGTTCCGGCTCCCGCCGCATCTTCCGCTCCTCA
CCTCACGCTGCCTGAGCCTCTGCCTCCACCACAACCCAAGCCGCCACAGCCGCCACGGTC
CGGGCCATTTTCCACTCAGCCGCCTCAGCCGCTGCGGAGAGCTTCGGCAGACTCCGCGGC
CAGCCAAGCACAGACGTCACTTCCGGCCGGGGAAGCACCGCCTTCCGCGCTCAAACTTCT
CAAGCATTGGCTGGTGTTGACGACCTACCTGAGGTAGTGGGCGGGGCTTGGGAGCGAAGC
CTGAGGTTCCAGATGGGGTAGAAGGGGGGCTCCCCCAGAAAAATGCTTGACAGGCTGTGG
ACGTCTCCCTGTGCAGCCCCAGACCAAGGGACAGGGTCTCGAAGACCCGAGCCGGCCACC
TCTCCAGCCTGGCGTCAGAGGCCCCGCCAACCACCGAACGACTCTATTGTTCCCGTGCCC
TCTCTTGGGACTCCGCACTCTCCCTATCCAAGCCGCAGCTTCCAGATTCGTGGTTTTTGC
CCCAGGCCGCACGGAGATAACTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               231-458, - strand, RNAz p=0.959612
               

               
               325-435, - strand, RNAz p=0.614644

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-458, - strand, RNAz p=0.959612
               

               
               325-435, - strand, RNAz p=0.614644

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               192-728, gnl|bosTau2|chr15 (23129998-23129451)
               

               
               192-728, gnl|canFam2|chr21 (43000062-43000991)
               

               
               192-728, gnl|echTel1|scaffold_281038 (3136-4005)
               

               
               192-728, gnl|hg17|chr11 (17185346-17186260)
               

               
               192-728, gnl|Hg17|chr11 (17185921-17186508)
               

               
               192-728, gnl|mm7|chr7 (112365368-112366160)
               

               
               192-728, gnl|Mm7|chr7 (112365822-112366333)
               

               
               192-728, gnl|monDom2|scaffold_10 (54772965-54772141)
               

               
               192-728, gnl|oryCun1|scaffold_199683 (52495-51606)
               

               
               192-728, gnl|panTro1|chr9 (17368109-17369041)
               

               
               192-728, gnl|rheMac2|chr14 (54732269-54731359)
               

               
               192-728, gnl|rn3|chr1 (174676314-174677102)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               192-728, gnl|bosTau2|chr15 (23129998-23129451)
               

               
               192-728, gnl|canFam2|chr21 (43000062-43000991)
               

               
               192-728, gnl|echTel1|scaffold_281038 (3136-4005)
               

               
               192-728, gnl|hg17|chr11 (17185346-17186260)
               

               
               192-728, gnl|Hg17|chr11 (17185921-17186508)
               

               
               192-728, gnl|mm7|chr7 (112365368-112366160)
               

               
               192-728, gnl|Mm7|chr7 (112365822-112366333)
               

               
               192-728, gnl|monDom2|scaffold_10 (54772965-54772141)
               

               
               192-728, gnl|oryCun1|scaffold_199683 (52495-51606)
               

               
               192-728, gnl|panTro1|chr9 (17368109-17369041)
               

               
               192-728, gnl|rheMac2|chr14 (54732269-54731359)
               

               
               192-728, gnl|rn3|chr1 (174676314-174677102)

	231-458, - strand, RNAz p=0.959612
	325-435, - strand, RNAz p=0.614644

	192-728, gnl\|bosTau2\|chr15 (23129998-23129451)
	192-728, gnl\|canFam2\|chr21 (43000062-43000991)
	192-728, gnl\|echTel1\|scaffold_281038 (3136-4005)
	192-728, gnl\|hg17\|chr11 (17185346-17186260)
	192-728, gnl\|Hg17\|chr11 (17185921-17186508)
	192-728, gnl\|mm7\|chr7 (112365368-112366160)
	192-728, gnl\|Mm7\|chr7 (112365822-112366333)
	192-728, gnl\|monDom2\|scaffold_10 (54772965-54772141)
	192-728, gnl\|oryCun1\|scaffold_199683 (52495-51606)
	192-728, gnl\|panTro1\|chr9 (17368109-17369041)
	192-728, gnl\|rheMac2\|chr14 (54732269-54731359)
	192-728, gnl\|rn3\|chr1 (174676314-174677102)