Non-Coding RNA Search

Ss1.1-Lng1-LNG010066F03.5

Sequence:


               
               AGTTTTACATAGGTTCTTGTTTTTACTCCCGCCCTGGCCCCGCAACACACACCATGTGTC
ATTTCCTTGCAGTTTCACATTTTTGTCTCTAGCCCTTGTTCTCACCACCTCTGTCTCCTC
CCCAGTCTGACCAGCCCATTGCTCCCAGCAGCCTCTCTTCTCCAAAGGCAGGGGGATTCC
AGGAGGTGGGGTGGGGGCCAGCTGGACCCTTGGAATCTGACTTGGAGGCCTCCCCACCCA
CCCAGGAGCCCCTGCCAGCCTGCGGGGAGGGGGTCCTTCCTGACATCTGCTTGTTGCAGG
GATGGGGTATCAGTCCTGCTGGGGCCCTGGCACTCTGCTTTCCCAGCCAGGTCCCAGCAT
CTTAGCCCTCGGGGGGCCCGAGTGTGTGGGGGGAGTCGACACCCCCAGCTAAAGCACAAG
CACCTTAGTCGCACCTCCACTGCCCCCACATCCCAGCCTTGACACCCCACCCCAGCGTAG
ATCCCAAAGCACAATATCCTGGTCACTTGGCAAGCTGCCGGGCCGACCAAGGCCAAGGGG
TGGGCTGGGGCTCCAGCCAGACCCCAAAAGGAAGCAGGAGTCCCCAGGCGCTCCCCTCCT
TCCAGGCCTTAGCGGGGGCCAGCTCTCTGGGACCGGGGTCTTCTCCCTCCCCACCCCCTT
GTCCTGGGCAGACCCCTGCCCAGCCCCTCCCCGCCTTGTGCTCTGGTGGGGCCCTGTCCC
TCCTCCAAGCCCCTGCAGCACTGGGTTGGGTGGCGGAGCCCTCTCATTTCAGGGAGCCCC
AGAGGTTCCCCTGGCTCCCCAGGCTGTTGGTCTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTTTACATAGGTTCTTGTTTTTACTCCCGCCCTGGCCCCGCAACACACACCATGTGTC
ATTTCCTTGCAGTTTCACATTTTTGTCTCTAGCCCTTGTTCTCACCACCTCTGTCTCCTC
CCCAGTCTGACCAGCCCATTGCTCCCAGCAGCCTCTCTTCTCCAAAGGCAGGGGGATTCC
AGGAGGTGGGGTGGGGGCCAGCTGGACCCTTGGAATCTGACTTGGAGGCCTCCCCACCCA
CCCAGGAGCCCCTGCCAGCCTGCGGGGAGGGGGTCCTTCCTGACATCTGCTTGTTGCAGG
GATGGGGTATCAGTCCTGCTGGGGCCCTGGCACTCTGCTTTCCCAGCCAGGTCCCAGCAT
CTTAGCCCTCGGGGGGCCCGAGTGTGTGGGGGGAGTCGACACCCCCAGCTAAAGCACAAG
CACCTTAGTCGCACCTCCACTGCCCCCACATCCCAGCCTTGACACCCCACCCCAGCGTAG
ATCCCAAAGCACAATATCCTGGTCACTTGGCAAGCTGCCGGGCCGACCAAGGCCAAGGGG
TGGGCTGGGGCTCCAGCCAGACCCCAAAAGGAAGCAGGAGTCCCCAGGCGCTCCCCTCCT
TCCAGGCCTTAGCGGGGGCCAGCTCTCTGGGACCGGGGTCTTCTCCCTCCCCACCCCCTT
GTCCTGGGCAGACCCCTGCCCAGCCCCTCCCCGCCTTGTGCTCTGGTGGGGCCCTGTCCC
TCCTCCAAGCCCCTGCAGCACTGGGTTGGGTGGCGGAGCCCTCTCATTTCAGGGAGCCCC
AGAGGTTCCCCTGGCTCCCCAGGCTGTTGGTCTGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               88-458, - strand, RNAz p=0.998318
               

               
               494-697, - strand, RNAz p=0.998994

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               88-458, - strand, RNAz p=0.998318
               

               
               494-697, - strand, RNAz p=0.998994

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               129-219, + strand, RNAmicro p=0.961168
               

               
               345-411, + strand, RNAmicro p=0.934287
               

               
               86-221, - strand, RNAmicro p=0.929698

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               129-219, + strand, RNAmicro p=0.961168
               

               
               345-411, + strand, RNAmicro p=0.934287
               

               
               86-221, - strand, RNAmicro p=0.929698

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               14-697, gnl|bosTau2|chr7 (9332503-9333178)
               

               
               14-697, gnl|Hg17|chr19 (13111642-13112322)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-697, gnl|bosTau2|chr7 (9332503-9333178)
               

               
               14-697, gnl|Hg17|chr19 (13111642-13112322)

	88-458, - strand, RNAz p=0.998318
	494-697, - strand, RNAz p=0.998994

	129-219, + strand, RNAmicro p=0.961168
	345-411, + strand, RNAmicro p=0.934287
	86-221, - strand, RNAmicro p=0.929698

	14-697, gnl\|bosTau2\|chr7 (9332503-9333178)
	14-697, gnl\|Hg17\|chr19 (13111642-13112322)